Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H06
         (1187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    28   2.9  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    28   2.9  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    27   3.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   6.8  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 891 FKSVIIRSSHKVHSQFSHFNNLKYFRNIIYVIIMF 787
           F+++I+    +   Q S FN+L YF + I+ ++ F
Sbjct: 336 FRALILACGLQAMQQLSGFNSLMYFSSTIFEVVGF 370


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 873 RSSHKVHSQFSHFNNLKYFRN 811
           R S  +HS F HFN++K  +N
Sbjct: 333 RPSKNIHSMFQHFNSMKKNKN 353


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 5/137 (3%)
 Frame = +1

Query: 199 TFSSAHRLHSPFLSXXAXKKVYGKCNNPNGHG---HNYVVLVTVKGPVDPQTGMVMNITD 369
           +F ++ R+  P +S    +++YG  N          N +  VT+    D        +T 
Sbjct: 42  SFMTSSRMDKPSMSNKPREQMYGLGNMTAVQEPIPENSLKTVTL----DQAQTAASTVTG 97

Query: 370 LKK-YIKTAILEPLDHKNLDNDVPYFKTM-ASTTENVAIYVWDQLQRIMEKPQLLHEVKI 543
           L   Y+      PLD++ LD+ +P+F  +  +       Y W+  + +    Q +    +
Sbjct: 98  LHPIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEI--ASV 155

Query: 544 LETEKNHVVYRGGNTYS 594
           +  +   +++  G T S
Sbjct: 156 INADPREIIFTSGATES 172


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 832  IKMAELAMHLM**-PNNYRFKFLFMIGYFNKI 924
            I +A L MHL    P+NY F  L   G F+KI
Sbjct: 1397 INLASLTMHLYYTEPSNYAFMNLLKAGVFHKI 1428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,809,419
Number of Sequences: 5004
Number of extensions: 73621
Number of successful extensions: 176
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)