Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H06
         (1187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...   153   2e-37
AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...   153   3e-37
U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine rece...    30   2.8  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    30   2.8  

>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score =  153 bits (371), Expect = 2e-37
 Identities = 70/140 (50%), Positives = 101/140 (72%)
 Frame = +1

Query: 160 MSSXPLVSIXRRETFSSAHRLHSPFLSXXAXKKVYGKCNNPNGHGHNYVVLVTVKGPVDP 339
           M   P+V++ R ++FS+AHRLHS  LS    K+ +GKCNN NGHGHNYV  V ++G VDP
Sbjct: 1   MFRMPIVTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDP 60

Query: 340 QTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKP 519
            +GMV ++  LKK + + +L+ +DH+NLD DV +FKT  ST+ENVAIY++++L+ +M  P
Sbjct: 61  TSGMVYDLAKLKKEM-SLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNP 119

Query: 520 QLLHEVKILETEKNHVVYRG 579
            +L++V I ET KN   Y+G
Sbjct: 120 SVLYKVTIEETPKNIFTYKG 139


>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score =  153 bits (370), Expect = 3e-37
 Identities = 69/136 (50%), Positives = 100/136 (73%)
 Frame = +1

Query: 172 PLVSIXRRETFSSAHRLHSPFLSXXAXKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGM 351
           P+V++ R ++FS+AHRLHS  LS    K+ +GKCNN NGHGHNYV  V ++G VDP +GM
Sbjct: 2   PIVTMERVDSFSAAHRLHSEKLSDAENKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGM 61

Query: 352 VMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKPQLLH 531
           V ++  LKK + + +L+ +DH+NLD DV +FKT  ST+ENVAIY++++L+ +M  P +L+
Sbjct: 62  VYDLAKLKKEM-SLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVLY 120

Query: 532 EVKILETEKNHVVYRG 579
           +V I ET KN   Y+G
Sbjct: 121 KVTIEETPKNIFTYKG 136


>U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine
           receptor, class x protein115 protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -3

Query: 441 VWNIII*ILMVEWFQDGCFYVFLEVSYIHHHTSLRIYRTLYCYKNNIIMTVTIRIVAFTI 262
           +W I I ++ +    DGC Y+F   S     T     RTL  Y  N+++ +   I++F+I
Sbjct: 128 LWCIAI-LMSLPAMIDGCSYIFFVDSVSWSPTDTVCSRTLSEYVTNLVLVMA--IISFSI 184

Query: 261 N 259
           N
Sbjct: 185 N 185


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 894 KFKSVIIRSSHKVHSQFSHFNNLKYFRNIIYV 799
           +F S ++ S H++ S + H NN KY+ N+I++
Sbjct: 119 QFVSAVVLSVHRITSVYLHMNNDKYW-NLIFI 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,085,058
Number of Sequences: 27780
Number of extensions: 408085
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3255550896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)