Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H04
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.80 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    26   9.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +3

Query: 888 PPXGGVPPXXGGGXPPPXXGGGGXXPPPXXXPXXGA 995
           P  GG PP      PPP   G G  PPP   P   A
Sbjct: 756 PIMGGPPPPP----PPPGVAGAGPPPPPPPPPAVSA 787



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
 Frame = -1

Query: 679 PPXXPLFGXGPXXGPXAXXFXPGXPPXLGXTRXPPX---GGGXPXPPPXXPGARGXGG 515
           PP  P     P   P      P  P   G    PP     G  P PPP  P A   GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -1

Query: 991 PXXGXXXGGGXXPPPPXXGGGXPPPXXGGTPP 896
           P      GG   PPPP    G  PP     PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -1

Query: 1018 PXNXPRKXAPXXGXXXGGGXXPPPPXXGGGXPPP 917
            P   P    P      G    PPPP   G  PPP
Sbjct: 744  PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 635 GAPXGPXPEKGXGGGXXPXXPPP 703
           G P  P P  G  G   P  PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +2

Query: 545 GGGXGXPPP-XGGXXGXPQXXGXPRXKXXGXGAPXGPXPEKGXGGG 679
           GGG G PPP  GG  G     G         G   GP   +G  GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 964 GXXPPPPXXGGGXPPPXXGGTPPXG 890
           G  PPPP   G  PP      PP G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +3

Query: 891 PXGGVPPXXGGGX--PPPXXGGGGXXPPPXXXP 983
           P G   P  G G   PPP  G G   PPP   P
Sbjct: 114 PVGLAGPVRGVGYTAPPPPAGFGRGAPPPGFRP 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,180
Number of Sequences: 5004
Number of extensions: 40245
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)