Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_H03
         (1186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   268   1e-72
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    27   5.1  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  268 bits (656), Expect = 1e-72
 Identities = 141/316 (44%), Positives = 180/316 (56%), Gaps = 2/316 (0%)
 Frame = +3

Query: 45  IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 218
           I+STN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH   
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGIL 71

Query: 219 XXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT 398
                          N LVPL++GAPD+A+PR+NN  F              + E G G 
Sbjct: 72  MIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGG 131

Query: 399 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 578
           G TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF
Sbjct: 132 GWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLF 191

Query: 579 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 758
             A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVY
Sbjct: 192 AWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVY 251

Query: 759 ILILPGFGIISHIISQERGKKETFGCLGIIYAILAXGLLGFIV*AHHIFTVGIDXDTRAY 938
           ILI+P FG++SHII      K  FG  G+++A+L+  LLG +V +HH+FTVG+D DTRAY
Sbjct: 252 ILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAY 310

Query: 939 FTSATIIXAVPPGIKI 986
           F++AT++ A+P GIKI
Sbjct: 311 FSAATMVIAIPTGIKI 326


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 5   IDPIGNPXDFAKMNLFYKS*RYWNIIFY-FWYLIRNNWNIFKTF 133
           I+PI N   F  ++ F K   +W  +FY +W L +N + I +TF
Sbjct: 58  IEPIDNTSFF--LHPFKKIRFWWRYLFYGWWNLKKNQFLIKRTF 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,402,847
Number of Sequences: 5004
Number of extensions: 60850
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)