Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G24
(1187 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 53 9e-08
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 48 3e-06
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 46 8e-06
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 46 8e-06
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 42 2e-04
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 41 3e-04
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 39 0.002
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 38 0.002
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 38 0.002
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 35 0.019
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.025
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 33 0.10
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 33 0.10
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 33 0.10
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 32 0.18
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 32 0.18
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.24
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.96
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 1.7
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 28 2.2
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 28 2.9
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 3.9
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 3.9
SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 27 3.9
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 5.1
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 27 6.8
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 26 8.9
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 26 8.9
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 52.8 bits (121), Expect = 9e-08
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +1
Query: 385 LLCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGAPLLTREHIFPNFLLNELV 564
L CP+C E + + T CGH++CY C+ L + CP C L T+ P +L+ E++
Sbjct: 83 LECPICTEALQRPFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS--PAYLVYEIM 140
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 47.6 bits (108), Expect = 3e-06
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 367 EDKDCELLCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKC 504
E+ EL C +CF ++ + V+ CGH+FC C+ +AL +CP C
Sbjct: 161 ENVSRELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCPTC 206
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 46.4 bits (105), Expect = 8e-06
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 391 CPVC-FELIDEAYVTRCGHSFCYACISRALDL-HRRCPKCG 507
C VC FE + ++ CGH FCY CI + ++ RRCP CG
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQKRIETRQRRCPICG 667
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 46.4 bits (105), Expect = 8e-06
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +1
Query: 376 DCELLCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGAPLLTREHIFPNFLLN 555
D L C +C E +T C H+FC CI L H CP C AP + N +L
Sbjct: 24 DSSLRCLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRAP-EQESRLRKNTILE 82
Query: 556 ELV 564
E++
Sbjct: 83 EIL 85
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 41.9 bits (94), Expect = 2e-04
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 388 LCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGAPL 516
+C +C ++I + ++T CGH +C C+ L CP C L
Sbjct: 1091 ICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 391 CPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGA 510
C +C E I T CGH FC++CI+ CP C A
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRA 295
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 38.7 bits (86), Expect = 0.002
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 385 LLCPVCFELIDEAYVTRCGHSFCYACISRALDL-----HRRCPKCGAPL 516
++C +C E+ +A +RC H+FC C++ ++ + CP C PL
Sbjct: 709 IVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPL 757
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 370 DKDCELLCPVCFELI---DEAYVTR--CGHSFCYACISRALDLHRRCPKC 504
D+ +L CP+C++ + DE T+ CGH F C+ + L+ H CP C
Sbjct: 100 DQLMDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLC 149
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Frame = +1
Query: 388 LCPVCFELIDEA------YVTRCGHSFCYACISRALDL--HRRCPKC 504
LC +C + DE Y T CGH++CYACI L L + CP C
Sbjct: 191 LCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPIC 237
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 35.1 bits (77), Expect = 0.019
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +1
Query: 367 EDKDCELLCPVCFELID----EAYVTRCGHSFCYACISRAL-DLHRRCPKCGAPLLTREH 531
ED+D ++ CP+C E ID +CG+ C C DL+ RCP C L T E+
Sbjct: 11 EDED-DMCCPLCMEEIDISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCPAC-RRLYTEEN 68
Query: 532 I 534
+
Sbjct: 69 V 69
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.7 bits (76), Expect = 0.025
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 391 CPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGAPLLTREHIFPN 543
C +C + + T CGH FC CI AL KC P+ R+ + PN
Sbjct: 206 CVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKC--PVCRRK-VHPN 253
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 373 KDCELLCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKC 504
+D +C +C + T CGH FC C A+ +R+ P C
Sbjct: 248 EDIPFVCLICKKDYRSPIATTCGHHFCEQC---AITRYRKTPTC 288
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 32.7 bits (71), Expect = 0.10
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +1
Query: 367 EDKDCELLCPVCFELIDEAYVTRCGHSFCYACI--SRALDLHRRCPKC----GAPLLTRE 528
+D+D E +C +C E I + V C H C+ C RAL + C C L+T++
Sbjct: 74 QDED-EQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLITKD 132
Query: 529 H 531
H
Sbjct: 133 H 133
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 32.7 bits (71), Expect = 0.10
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 391 CPVCFELID-EAYVTRCGHSFCYACISRALD 480
CP C E A ++RCGH +C++C+ R ++
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCLLRFVE 244
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 31.9 bits (69), Expect = 0.18
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 388 LCPVCFELIDEAYVTRCGHSFCYACISRALDLHR-RCP 498
+C +C E I V G FCY CI L H +CP
Sbjct: 256 ICKICGEKIKNPAVLSTGFVFCYPCIQVWLQRHPFKCP 293
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 385 LLCPVC-FELIDEAYVTRCGHSFCYACISRALDLHR--RCPKCGAP 513
L C VC F + CGH+FC C+ + H+ CP+C P
Sbjct: 637 LKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYE-HKTSTCPQCETP 681
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 31.5 bits (68), Expect = 0.24
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 391 CPVCFELID-EAYVTRCGHS-FCYACISRALDLHRRCPKC 504
C +C + A ++ CGH F Y+CI R +D CP C
Sbjct: 21 CVICLQKDGLRAQLSPCGHDQFDYSCICRWMDQSLTCPIC 60
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.96
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 367 EDKDCELLCPVCFELIDEAYVTRCGHSFCYACISRALDLHRRCPKCGAPL 516
E+ +C + C F++ D+ C H F CI L ++ C C AP+
Sbjct: 392 EEGECTI-CMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Frame = +1
Query: 391 CPVCF-ELIDEAYVTRCGHSFCYACISRALDLHRR-------CPKCGAPLLTREHIFPNF 546
CP+C E I + C H+ C C+S + +R C C P ++ P F
Sbjct: 877 CPICCNEPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDVYKPFF 936
Query: 547 LLN 555
+ N
Sbjct: 937 VKN 939
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 424 YVTRCGHSFCYACISRALDLHRRCP-KCGAPLLTREHIFPNFL 549
+ +CGH FC C CP + +T++ IFP +L
Sbjct: 163 FAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPLYL 205
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +1
Query: 391 CPVCFELI---DEAYVTRCGHSFCYACI 465
C VCF+ D +TRCGH C +C+
Sbjct: 174 CNVCFDEFNGTDCFQLTRCGHVSCQSCL 201
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 385 LLCPVCFELIDEAYV-TRCGHSFCYACISRAL 477
L C +C +++ E + CGH C C++ +
Sbjct: 744 LQCSLCMDVVAELLIIVPCGHFLCRECLTHVI 775
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = +1
Query: 376 DCELLCPVCFELI----DEAYVTRCGHSFCYACISRALDLHRRCPKCGAPLLTREHIF 537
DC CP+C E + + C H C + + RCP C ++ +F
Sbjct: 268 DCN--CPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNYRCPTCYKTIINVNSLF 323
>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 436 CGHSFCYACISRALDLHRRCP 498
C H+F + CISR L+ CP
Sbjct: 74 CNHAFHFHCISRWLNTRNVCP 94
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 499 KCGAPLLTREHIFPN 543
KCG P LT +++FPN
Sbjct: 248 KCGQPTLTDQYLFPN 262
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 391 CPVCF-ELIDEAYVTRCGHSFCYACISRALD 480
C +C+ E + C H FC AC + LD
Sbjct: 131 CEICYDEGCLPFFSAECDHEFCLACYRQYLD 161
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 980 PGYIGDLFPERSDGXWXGSAPPGG 909
P YI D FP+ + G APPGG
Sbjct: 336 PAYITDFFPKSNPG---APAPPGG 356
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Frame = +1
Query: 370 DKDCELLCPVCFELIDEA--------YVTRCGHSFCYACISRALDLHRRCPKC 504
+ D ++CP C E + + + T+CGH +C +C R KC
Sbjct: 182 NNDTLMVCPRCQEPLGTSKSKEKSALWATKCGHVYCGSCAKVLKTSKRSQSKC 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,261
Number of Sequences: 5004
Number of extensions: 35232
Number of successful extensions: 139
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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