Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G22
         (1193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...   103   4e-23
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   5.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   5.1  

>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score =  103 bits (248), Expect = 4e-23
 Identities = 78/249 (31%), Positives = 115/249 (46%), Gaps = 19/249 (7%)
 Frame = +2

Query: 296 IYAXFLNTKGRVLYXVLXH--------KWNXDXSFLLACXKNVISHIQKHLKMYKLKXLV 451
           +Y  FLNT+GRVL+    +        +        +   K   S   KHLK Y L+   
Sbjct: 57  VYTGFLNTQGRVLFDSFIYPKVSNNGTENERSDELYVEIDKVAESDFLKHLKKYNLRSRC 116

Query: 452 EITDL-SNEYKIHALVPNVNIGVVTPTHNVNIYKDPRLPELGM-RIISPMSITHSELIKI 625
            I  + S E  I  +        +  T  V   KDPR  +  + R+I P S   S     
Sbjct: 117 SIAKIPSEELSIKVIWDVKEESRLKDT--VAYAKDPRFSKQRLLRMIVPTSTCTSSS--- 171

Query: 626 PTKDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFHKGCYIGQEL 805
                    S + YK  RY+ G+ EG +++ P ++FPLE N D++ G+ FHKGCY+GQEL
Sbjct: 172 -------SGSLDDYKVFRYRNGIPEGPQEIIPSISFPLESNMDWMKGIDFHKGCYLGQEL 224

Query: 806 TARVHHTGVVRKRIMPIKF-------TQAVDGLDKDSTINASXNPKS--TIGKLXGYIQN 958
           T R ++TGV RKRI P          +Q ++     S +     P S  + GK+   +  
Sbjct: 225 TVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIVAKQGEPVSRRSPGKIIAILGK 284

Query: 959 YGLGLIRVK 985
            GL L+R++
Sbjct: 285 VGLALVRLQ 293


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 488 HVFCTRCSNQLFPLXXLICTFLNVS 414
           HVFC + SN L     L+ T LNVS
Sbjct: 323 HVFCNQLSNNLAYQQNLLFTSLNVS 347


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +2

Query: 509 IGVVTPTHNVNIYKDPRLPEL----GMRII-SPMSITH 607
           +G +TP    NIY DP   ++    G+ I+  P+ ITH
Sbjct: 156 VGNITPAAEFNIYVDPHAAQMVLSSGIPIVMMPLDITH 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,680,846
Number of Sequences: 5004
Number of extensions: 70647
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)