Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G22
(1193 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0248 - 1871955-1872199,1872289-1872447,1873139-1873237,187... 94 2e-19
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 31 2.4
09_04_0239 + 15954995-15956242 30 3.1
08_02_1002 + 23439642-23440046,23440558-23440761,23440874-234409... 29 5.5
05_05_0377 - 24498664-24500215,24500306-24500643 29 5.5
11_01_0239 - 1842576-1842741,1843264-1843379,1843667-1843738,184... 29 7.2
03_05_1125 + 30576951-30577010,30577163-30577285,30577393-305775... 29 9.5
>06_01_0248 - 1871955-1872199,1872289-1872447,1873139-1873237,
1873420-1873589,1874420-1874868
Length = 373
Score = 93.9 bits (223), Expect = 2e-19
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 6/199 (3%)
Frame = +2
Query: 425 KMYKLKXLVEITDLSNEYKIHALVPNVNIGVVTPTHNVNIYKDPRLPELGMRIISPMSIT 604
K Y+L+ VEI ++S E+ N+ P+ ++P +G +
Sbjct: 149 KRYRLRSKVEIDNVSKEFLCWQRFGR-NVEHTGPST-----QEPEAQSIGWG----QGVD 198
Query: 605 HS--ELIKIPTKDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLEVNCDYLHGVSFH 778
H+ + P + + E Y R + GV+EGS ++P G PLE N L+ +SF
Sbjct: 199 HAAESAAQAPLVESDKEADERHYLLWRIENGVAEGSTEIPKGEAIPLEYNFAGLNAISFE 258
Query: 779 KGCYIGQELTARVHHTGVVRKRIMPIKFTQAVDGLDKDSTINASXNPKSTIGKLXGYIQ- 955
KGCYIGQEL AR HH GV+RKR+MP+ F K + S GK G +
Sbjct: 259 KGCYIGQELIARTHHRGVIRKRLMPLIFEDENGQELKQAVAPGSEVVDKESGKKIGTVNT 318
Query: 956 ---NYGLGLIRVKEALXAN 1003
+ G+GL+R++EAL N
Sbjct: 319 ALGSRGMGLLRLEEALKQN 337
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 30.7 bits (66), Expect = 2.4
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 839 SLQLLYDELVLSVLVQYNNPCGS*HHEDSHSSLPKERLLQAVNLQILHLHPTY 681
SLQL+YD +++S Y C D HS+ PK + L L L P Y
Sbjct: 318 SLQLMYDPVIISSGQTYERVCIEKWFNDGHSTCPKTQ----QQLSHLSLTPNY 366
>09_04_0239 + 15954995-15956242
Length = 415
Score = 30.3 bits (65), Expect = 3.1
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 536 VNIYKDPRLPELGMRIISPMSITHSELIKIPTKDIQIKNSEEGYKCLRYKLGVSEGSEDL 715
+ +YKD R+ + P S + TKD+ + E G +R L V + +
Sbjct: 30 LRVYKDGRIKKFVRHATVPASPVERSPSGVVTKDVVAVDDETGVS-VRLFLPVDAAAAAV 88
Query: 716 PPGVTFPLEVNCDYLHGVSFHKG 784
G PL V Y+HG +F G
Sbjct: 89 AAGRRLPLVV---YVHGGAFCSG 108
>08_02_1002 +
23439642-23440046,23440558-23440761,23440874-23440990,
23441116-23441511,23441586-23441938,23442067-23442187,
23442602-23442781,23442813-23442896,23444398-23444523,
23445286-23445588
Length = 762
Score = 29.5 bits (63), Expect = 5.5
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 569 LGMRIISPMSITHSELIKIP--TKDIQIKNSEEGYKCLRYKLGVSEGSEDLPPGVTFPLE 742
+G R++S M+I H ++++P K + K + G GV G + P VTF L
Sbjct: 597 VGGRVLSAMTIEHF-ILRLPYNAKHVNPKGVKSGNGAAAAARGVF-GLDWPEPSVTFALS 654
Query: 743 VNCDYLHGVSFHKGCYIGQELTA 811
V + C++ +EL A
Sbjct: 655 CGSWSSPAVRVYTACHVEEELEA 677
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 29.5 bits (63), Expect = 5.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 472 RVQNTCFSTKCEYWCSYSNTQ 534
RVQ T FS KC WC+ N Q
Sbjct: 589 RVQATYFSPKCPKWCAGGNKQ 609
>11_01_0239 -
1842576-1842741,1843264-1843379,1843667-1843738,
1844057-1844143,1844479-1844582,1845250-1845307,
1845582-1845630,1846252-1846577,1846645-1846785
Length = 372
Score = 29.1 bits (62), Expect = 7.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 329 VLYXVLXHKWNXDXSFLLACXKNVISHIQKHLKMYKLKXLVEITDLS 469
V+ + HKW +L AC + + H+K + LK + + + S
Sbjct: 244 VISTIFDHKWTHLLKYLAACKTPLFFAAEIHMKQFSLKPMKALFNAS 290
>03_05_1125 +
30576951-30577010,30577163-30577285,30577393-30577552,
30577635-30577702,30577928-30578473,30578725-30579312,
30579392-30579604,30580227-30580388
Length = 639
Score = 28.7 bits (61), Expect = 9.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +2
Query: 467 SNEYKIHALVPNVNIGVVTPTHNVNIYKDPRL 562
+N +HA +P+ +G+ +P+++ +Y D RL
Sbjct: 316 ANLMGMHAQIPSSGMGLTSPSYHTRMYPDNRL 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,333,147
Number of Sequences: 37544
Number of extensions: 420380
Number of successful extensions: 895
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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