Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G21
(1151 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 368 e-103
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 215 7e-57
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 207 2e-54
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 191 2e-49
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 29 1.6
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 2.1
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 4.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 368 bits (906), Expect = e-103
Identities = 172/265 (64%), Positives = 202/265 (76%)
Frame = +3
Query: 153 MXXIVHLQAGQCGNQLGAKFWXLXSEAHGIDPTGVXRGTSDLQLEXISVYYNEASVATAE 332
M IVH+QAGQCGNQ+GA FW ++ HG+D G+ GTS+ Q E ++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA----- 55
Query: 333 XGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 512
GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 56 -GGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 513 AVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 692
AVLDVVR+E E CD LQGFQ KIREEYPDR+M T+SV P+PK
Sbjct: 115 AVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPK 174
Query: 693 VSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMS 872
SDTVVEPYNA LS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+
Sbjct: 175 SSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMA 234
Query: 873 GVTTCLRFPGQXNADLRKLAVNMVP 947
GVTT RFPG+ N+DLRKLAVNMVP
Sbjct: 235 GVTTSFRFPGELNSDLRKLAVNMVP 259
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 949 PRXHFFMPGFAPXXSRG 999
PR HFFM GFAP + G
Sbjct: 261 PRLHFFMVGFAPLAAIG 277
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 215 bits (526), Expect = 7e-57
Identities = 106/267 (39%), Positives = 154/267 (57%), Gaps = 2/267 (0%)
Frame = +3
Query: 153 MXXIVHLQAGQCGNQLGAKFWXLXSEAHGIDPTGVXRGTSDLQLEXISVYYNEA-SVATA 329
M ++ + GQ G Q+G W L HGI P G T + ++ + Y N+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFP--TENSEVHKNNSYLNDGFGTFFS 58
Query: 330 EXG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 506
E G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E+
Sbjct: 59 ETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEM 118
Query: 507 VDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 686
+D+VL+ +R+ +NC LQGF ++ EY + +SV P+
Sbjct: 119 IDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPA 178
Query: 687 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLT 866
P+VS +VVEPYN+VL+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++
Sbjct: 179 PQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQV 238
Query: 867 MSGVTTCLRFPGQXNADLRKLAVNMVP 947
+S +T LRF G N DL + N+VP
Sbjct: 239 VSSITASLRFAGSLNVDLNEFQTNLVP 265
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 207 bits (506), Expect = 2e-54
Identities = 104/267 (38%), Positives = 146/267 (54%), Gaps = 2/267 (0%)
Frame = +3
Query: 153 MXXIVHLQAGQCGNQLGAKFWXLXSEAHGIDPTGVXRGTSDLQLEX--ISVYYNEASVAT 326
M I+ + GQ G Q+G W L HGI P G + Q S +++E
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ-- 58
Query: 327 AEXGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAEL 506
GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G EL
Sbjct: 59 ----GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKEL 114
Query: 507 VDAVLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPS 686
VD V D +R+ +NC LQGF ++ EY + +SV P+
Sbjct: 115 VDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPA 174
Query: 687 PKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLT 866
P+VS +VVEPYN+VL+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++
Sbjct: 175 PQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQV 234
Query: 867 MSGVTTCLRFPGQXNADLRKLAVNMVP 947
+S +T LRF G N DL + N+VP
Sbjct: 235 VSSITASLRFEGSLNVDLAEFQTNLVP 261
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 191 bits (465), Expect = 2e-49
Identities = 97/266 (36%), Positives = 147/266 (55%), Gaps = 3/266 (1%)
Frame = +3
Query: 162 IVHLQAGQCGNQLGAKFWXLXSEAHGIDPTGVXRGTSDLQLEXISVYYNEASVATAEXGG 341
I+ LQAGQCGNQ+G++FW HGI P G + ++ V++ ++
Sbjct: 5 IITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDT------ 58
Query: 342 KYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSG--AGNNWAKGHYTEGAELVDA 515
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++G AGNNWA G Y+ + +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 516 VLDVVRKECENCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPK 692
++D++ +E + D L+GF ++ + YP +I+ TYSV P S
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQS 177
Query: 693 VSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMS 872
VSD VV+PYN++L++ +L N D +DN AL I L NPT+ N LVS MS
Sbjct: 178 VSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMS 237
Query: 873 GVTTCLRFPGQXNADLRKLAVNMVPS 950
TT LR+PG N DL + +++PS
Sbjct: 238 ASTTTLRYPGYMNNDLVSIIASLIPS 263
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 474 AKGHYTEGAELVDAVLDVVRKECENCDCLQ 563
A+GH G ELV A D +RK+ EN L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 672 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 824
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 4.9
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 741 QLVENTDETYCIDNEALYDICYRTLKVPNPTYGDLNHLVSLTMSGVTTCLRFPGQXNADL 920
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 921 RKLAVNMV 944
R +A+NM+
Sbjct: 353 RYVALNML 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,023
Number of Sequences: 5004
Number of extensions: 58058
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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