Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G20
         (1271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       46   8e-05
05_03_0661 - 16726958-16726966,16727133-16727234                       45   1e-04

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 45.6 bits (103), Expect = 8e-05
 Identities = 20/44 (45%), Positives = 27/44 (61%)
 Frame = +2

Query: 89  MAKSKHHPNHHQNRKAHXNGXKKPRKPRHXSTLXHGSKIFKESK 220
           MAKSK+H  H+Q+ KAH NG KKP++ R  ST     K  +  +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQR 44


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = +2

Query: 89  MAKSKHHPNHHQNRKAHXNGXKKPRKPRHXST 184
           MAKSK+H  H+Q+ KAH NG KKP++ R  ST
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTST 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,866
Number of Sequences: 37544
Number of extensions: 208969
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)