Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G18
(1205 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 450 e-127
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 257 2e-69
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 241 1e-64
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 155 9e-39
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 104 2e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 97 6e-21
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 83 6e-17
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 69 1e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 64 3e-11
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.18
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.18
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.98
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 2.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 5.2
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 5.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 9.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 450 bits (1110), Expect = e-127
Identities = 217/268 (80%), Positives = 225/268 (83%), Gaps = 1/268 (0%)
Frame = +1
Query: 229 NGSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMGQXDSYVGAXAQSKXGILTLKYPI 408
NGSGMCKAGFAG APRAVFPSIVGRPRH G+MVGMGQ DSYVG AQSK GILTLKYPI
Sbjct: 12 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPI 71
Query: 409 EHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 588
EHGIV NWDDMEK WHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA
Sbjct: 72 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPA 131
Query: 589 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDYLMK 768
YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGR LTDYLMK
Sbjct: 132 FYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
Query: 769 ILTERGYSFTTTAEREIVRDIKEKLCYVALDFEXEMXTXAXXXXXXXXYELPDGQVITIG 948
IL ERGY+F+TTAEREIVRDIKEKLCYVALDFE E+ T A YELPDGQVITIG
Sbjct: 192 ILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIG 251
Query: 949 NERF-XXXXLSSNLVLGYGXXRXHETXY 1029
NERF L LG HE Y
Sbjct: 252 NERFRAPEALFQPSALGLENAGIHEATY 279
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 257 bits (630), Expect = 2e-69
Identities = 119/245 (48%), Positives = 167/245 (68%), Gaps = 1/245 (0%)
Frame = +1
Query: 229 NGSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMGQXDSYVGAXAQSKXGILTLKYPI 408
NGSG KAGFAG P+ +FP+ VGR +H+ VM Q D +VG+ AQ+ G+L ++ PI
Sbjct: 16 NGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPI 75
Query: 409 EHGIVTNWDDMEKXWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 585
E GI+ NW DME+ W + + ++ L PEEHP+LLTE PL N+EK+ + +ET N P
Sbjct: 76 ERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVP 135
Query: 586 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDYLM 765
A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR +TDYL
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Query: 766 KILTERGYSFTTTAEREIVRDIKEKLCYVALDFEXEMXTXAXXXXXXXXYELPDGQVITI 945
L + G+ ++AE+EIVR+IKEK CYVA DF E+ + Y+LPD Q IT+
Sbjct: 196 LQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITL 255
Query: 946 GNERF 960
G E F
Sbjct: 256 GTECF 260
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 241 bits (590), Expect = 1e-64
Identities = 115/246 (46%), Positives = 162/246 (65%), Gaps = 2/246 (0%)
Frame = +1
Query: 229 NGSGMCKAGFAGXAAPRAVFPSIVGRP--RHQGVMVGMGQXDSYVGAXAQSKXGILTLKY 402
NG+G K G+A PR FPSIVGRP R + + D VG A++ +L +KY
Sbjct: 10 NGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKY 69
Query: 403 PIEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 582
P+E+GI+ ++++M + W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 583 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDYL 762
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGR T YL
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYL 189
Query: 763 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEXEMXTXAXXXXXXXXYELPDGQVIT 942
+ +L +GY+F TA+ E VR++KEKLCYV+ D E + Y LPDG+VI
Sbjct: 190 ISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIK 249
Query: 943 IGNERF 960
+G+ER+
Sbjct: 250 VGSERY 255
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 155 bits (377), Expect = 9e-39
Identities = 97/249 (38%), Positives = 130/249 (52%), Gaps = 34/249 (13%)
Frame = +1
Query: 229 NGSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMG----------------------- 339
NG+G K G+AG AP VFP+++ R G G
Sbjct: 12 NGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATE 70
Query: 340 QXDSYVGAXAQSKXGI-LTLKYPIEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTE 516
D ++G A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE
Sbjct: 71 DLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTE 130
Query: 517 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGV 672
PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV
Sbjct: 131 PPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGV 190
Query: 673 SHTVPIYEGYALPHAILRLDLAGRXLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLC 846
+H +P+ EGY + +I + LAGR +T ++ +L +R S TAER IKE+ C
Sbjct: 191 THIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECC 245
Query: 847 YVALDFEXE 873
YV D E
Sbjct: 246 YVCPDIVKE 254
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 104 bits (250), Expect = 2e-23
Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 3/219 (1%)
Frame = +1
Query: 229 NGSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMGQXDSYVGAXAQSKXGILTL-KYP 405
NGS +AG+ G P+ VF ++V R R + + + + VG + G ++ + P
Sbjct: 31 NGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSP 86
Query: 406 IEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 585
E +++NWD ME+ +TF +L + EHP+ +TE NP R MT+++FE +N P
Sbjct: 87 FERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAP 145
Query: 586 AMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDY 759
++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + Y
Sbjct: 146 SVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSY 205
Query: 760 LMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEXEM 876
L+K+ + SF + C+V+ D+ ++
Sbjct: 206 LLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDI 244
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 96.7 bits (230), Expect = 6e-21
Identities = 58/186 (31%), Positives = 89/186 (47%)
Frame = +1
Query: 232 GSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMGQXDSYVGAXAQSKXGILTLKYPIE 411
GS + GF+G P+ V PS G + G + Y+ +S G + +K I
Sbjct: 19 GSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIR 70
Query: 412 HGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 591
+G V NWD W + +L+ P EHP+L+TE NP NR K + MFE+ PA
Sbjct: 71 NGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPAT 130
Query: 592 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDYLMKI 771
Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L +
Sbjct: 131 YLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQT 190
Query: 772 LTERGY 789
L ++ +
Sbjct: 191 LRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 83.4 bits (197), Expect = 6e-17
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 2/190 (1%)
Frame = +1
Query: 232 GSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMGQXDSYVGAXAQSKXGI--LTLKYP 405
GS + G+AG +P + PS + GV + + YV Q I + +K
Sbjct: 18 GSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNG 71
Query: 406 IEHGIVTNWDDMEKXWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 585
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + P
Sbjct: 72 KSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVP 131
Query: 586 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXLTDYLM 765
A Y+ QAV +A+ ++T +++D G + P+ +G + I + LAG L +
Sbjct: 132 AFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIE 191
Query: 766 KILTERGYSF 795
++ F
Sbjct: 192 QLFNTMNIEF 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 69.3 bits (162), Expect = 1e-12
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +1
Query: 403 PIEHGIVTNWDDMEKXWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 570
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 571 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRXL 750
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 751 TDYLMKILTERGYSFTTTAEREIVRDIKE 837
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 64.5 bits (150), Expect = 3e-11
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 18/234 (7%)
Frame = +1
Query: 229 NGSGMCKAGFAGXAAPRAVFPSIVGRPRHQGVMVGMGQXDSYVGAXAQSKXGILTLKYPI 408
NG+ KAGFAG P+ + R + + ++G + TL++
Sbjct: 12 NGAYHIKAGFAGGKVVE--IPNCLTRSKDGNRL--------FLGNELANCNDFTTLQFRR 61
Query: 409 EH--GIVTNWDDMEKXWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETF 576
H G + +W W N + P ++ +LLT+ + Q++FE F
Sbjct: 62 AHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEF 121
Query: 577 NTPAMYVAIQAVLSLYASGRTTG--------------IVLDSGDGVSHTVPIYEGYALPH 714
A A L + G T +V+DSG +H +P+ +
Sbjct: 122 QFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQ 181
Query: 715 AILRLDLAGRXLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEXEM 876
A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+ +M
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKESVCYVSQNFKEDM 233
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.18
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 463 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 606
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.18
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 587 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 721
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 5.2
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 721
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 721
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.98
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 563 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 721
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 563 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 721
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 608 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 712
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 608 PCSRCTRPVVPPVSCWTPATVSPTPCPST 694
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 691
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 9.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 505 LLTEAPLNPKANREKMTQIMFETFN 579
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 9.1
Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Frame = +2
Query: 584 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTRDTHSPTPSCVWT*PVXXX 751
PP PS P P +PP + P + P P P P+ PV
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 752 XXXXXXXXXXXXXXXXXXXXGKSFVTSRRSCATSLLTSSXRWXPXHPAAPSXSL 913
G + SR+ A+ + S+ P A PS +L
Sbjct: 492 AELPQQDGRANLMASIRASGGMDLLKSRKVSASPSVASTKTSNPPVEAPPSNNL 545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,109,630
Number of Sequences: 5004
Number of extensions: 77300
Number of successful extensions: 259
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -