Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G18
         (1205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              45   1e-06
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   1.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   9.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 45.2 bits (102), Expect = 1e-06
 Identities = 27/54 (50%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 871  EMXTXAXXXXXXXXYELPDGQVITIGNERF-XXXXLSSNLVLGYGXXRXHETXY 1029
            EM T A        YELPDGQVITIGNERF     L     LG      HET Y
Sbjct: 1    EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTY 54


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 146 MKRPAVTANREKQRPIAGRWTLRXR 72
           +K P + ANR K   IAG++ L+ R
Sbjct: 284 IKLPKLAANRAKLEEIAGKFNLQVR 308


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 149 SSCHTFHLPHFTHSSCAPQQLP 214
           SS H    P   HSS  P Q+P
Sbjct: 627 SSPHFHQSPSQNHSSAVPDQMP 648


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 705 TP-PRHPASGLSRSRXHRLPHEDPHRARLLVHYH 803
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 475  LRVAPEEHPVLLTEAPLNPKANREKM 552
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 68  IGVXAGSTGRQSVSVSHGSQSLQGV 142
           +GV     G Q V  + G Q +QGV
Sbjct: 835 LGVQGVQQGVQGVQTAQGVQGVQGV 859


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,311
Number of Sequences: 438
Number of extensions: 6009
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)