Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G16
         (1188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   164   2e-41

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  164 bits (398), Expect = 2e-41
 Identities = 77/202 (38%), Positives = 121/202 (59%), Gaps = 2/202 (0%)
 Frame = +2

Query: 380 FAIFLYLCSGLGITAGAHXLWAHKSYKARLPLXILLTIFNTIAFQDAVVDWARDHRMHHK 559
           FAI  Y  SGLGITAG H LW+H++YKA+ PL   L      AF+ ++  W+RDHR HH+
Sbjct: 93  FAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHR 152

Query: 560 YSETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLHNDPILRFQKKYYQILM 739
           Y++TD DP+N  +GF+++H+GW+++ ++P    +    DV+DL++DP + F  +++  + 
Sbjct: 153 YTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFLPIA 209

Query: 740 PLACFIMPT-YVPTLWGETVWNSFYVCAIFRYVYVLNITWLVNSAAHMWGSKPYDKNINP 916
               FI P+ +   LWG+     FY   + R V+V + T+ VNS AH+ GS+P+D   + 
Sbjct: 210 SFMAFIFPSLFCGLLWGDYRGGYFY-AGVCRLVFVHHATFCVNSLAHLIGSQPFDDTNSA 268

Query: 917 XNQ-ARFVSGARRRIHNYNHTF 979
            N     +       HNY+H F
Sbjct: 269 RNHFITALVTLGEGNHNYHHAF 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,971,111
Number of Sequences: 5004
Number of extensions: 77982
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)