Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G15
(1217 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 30 0.75
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 29 1.3
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.3
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 27 4.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 5.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 7.0
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 9.2
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 29.9 bits (64), Expect = 0.75
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = -1
Query: 836 VALVTGKGGAAVCSRTVVGLFP**LWL*VRYNVVRPEGQLYHVWKPFLAAAVLFLV*PIT 657
V+ +TG C ++G+ LW+ + + P+G L FL +F + P+
Sbjct: 11 VSNLTGSSSIETCGLLLIGIACNVLWVNMTARNILPKGNL-----GFLVEFFIFCLIPLF 65
Query: 656 DVSYVAYEIEVFPCCVIAAFHFGDCLDAFVSH 561
V YV+ ++ VF C IA+F L +FV H
Sbjct: 66 -VIYVSSKVGVFTLC-IASF-----LPSFVLH 90
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +3
Query: 330 ELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKKAFRKLPNIESAMTALSNLK 497
E++++++ GK Y Q+ ++V T + V ++E K+AF + E+ +L NL+
Sbjct: 74 EVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLR 133
Query: 498 GV 503
V
Sbjct: 134 RV 135
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 708 HMVELALWTHNIVSDLQPQLLGKEPNNRPAANGGSPLPSDESNL--EPPATNGNGKLVT 878
+M L++ + S + P +G P+ + A S P+D++ PPA NGN VT
Sbjct: 235 NMESLSIPSRRRPSSIAP--IGTRPSRKEIAFSNSSTPTDQTLRPPNPPAANGNATPVT 291
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 28.3 bits (60), Expect = 2.3
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Frame = +3
Query: 150 LEANAKAFDSVLKLYPQALKLKAERKTKXPDXLIKLDNWYQNELPKKX--KSRGKDAHMI 323
LE +K FD + + K K ++K + + D ++ELP+K +S KD H +
Sbjct: 13 LEYRSKKFDKKSQSLEEHEK-KVQQKNEELEKKAA-DKISRDELPEKQLAQSNDKDKHSV 70
Query: 324 HEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTALSNLKG 500
+ +K K+ +GK + L N P+ ET + F++ + S G
Sbjct: 71 SNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSG 130
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 700 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 837
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 240 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 282
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 700 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 837
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 318 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 360
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 700 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 837
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 396 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 438
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 700 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 837
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 474 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 516
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 700 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 837
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 552 GYTTITTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 594
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 700 GFHTW*SWPSGRTTLYRTYNHSY*GKSPTTVRLQTAAPPFPVTRAT 837
G+ T + +G TTL T HS PTTV ++T P+P T T
Sbjct: 630 GYTTVTTGYTGSTTLTTTVPHSGNETGPTTVYVET---PYPTTVTT 672
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 783 NNRPAANGGSPLPSD--ESNLEPPATN---GNGKLVTDCVNEDTTTSCT 914
N+ P A GS PS S + A N G+ K+ DC+NE + C+
Sbjct: 107 NSVPEAAYGSAPPSTFASSAISEEAKNACKGDAKMFADCINEHEFSQCS 155
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 810 SPLPSDESNLEPPATNGNGKLVTDCVNEDTTTSCTEDSMDAK 935
S +PS S P T + + T+ N TTT+ +D K
Sbjct: 339 SSIPSSGSIRSPSLTTTSAQATTNATNNITTTTAAQDENATK 380
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 771 GKEPNNRPAANGGSPLPSDESNLEPPATNG 860
GK+ +N P +P+P S+ +PP+T G
Sbjct: 259 GKDQSNTPVIKAPAPIPFSVSS-DPPSTMG 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,750
Number of Sequences: 5004
Number of extensions: 77926
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -