Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G14
         (1230 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   7.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   7.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +1

Query: 202  ILTPQWQRRSVRSNVTQXGGWR--MPRSAENY 291
            +LT  W   +V S     G WR  MPRS  +Y
Sbjct: 1208 VLTLAWSESNVESKGRLLGFWRVEMPRSNADY 1239



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 779  FAYLQRSCKGNFGNIRVMCERHSCIFSE 696
            +A +   C+G+  N+    + H CI  E
Sbjct: 1627 YALISNQCEGDSLNVAKSLQDHDCIRQE 1654


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 709 QEWRSHITLMLPKFPLQDL 765
           Q+WR+H  L+ P F L  L
Sbjct: 132 QKWRNHRKLIAPTFHLNVL 150


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 787 WISLPTSKDPVKEILATSG*CVSATPASSPNPGTMLTTPLGMPASFNSAANAKAVN 620
           W+SL  S   +  +   S   +    AS  NPG    +    P SF +  ++  ++
Sbjct: 29  WLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLS 84


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 787 WISLPTSKDPVKEILATSG*CVSATPASSPNPGTMLTTPLGMPASFNSAANAKAVN 620
           W+SL  S   +  +   S   +    AS  NPG    +    P SF +  ++  ++
Sbjct: 29  WLSLDNSNMSMSSVGPQSPLDMKPDTASLINPGNFSPSGPNSPGSFTAGCHSNLLS 84


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 60  VNMVPEIKSTKLFIDNEWVD 119
           VN+  +I +T L+++  W D
Sbjct: 68  VNLKNQIMTTNLWVEQSWYD 87


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 60  VNMVPEIKSTKLFIDNEWVD 119
           VN+  +I +T L+++  W D
Sbjct: 68  VNLKNQIMTTNLWVEQSWYD 87


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 60  VNMVPEIKSTKLFIDNEWVD 119
           VN+  +I +T L+++  W D
Sbjct: 64  VNLKNQIMTTNLWVEQSWYD 83


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 60  VNMVPEIKSTKLFIDNEWVD 119
           VN+  +I +T ++++ EW D
Sbjct: 60  VNLKNQIMTTNVWVEQEWND 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 305,993
Number of Sequences: 438
Number of extensions: 6561
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41901987
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)