Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G12
         (1218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...    30   0.57 
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    29   1.3  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    28   2.3  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   4.0  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    27   5.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   7.0  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   9.2  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 451 YVHGGRINTVDLAKELNVDFNHITTHIPEIVK 546
           Y+HG +  T D    ++ DF+H   ++PE +K
Sbjct: 79  YIHGLKFATGDFVIIMDADFSHHPKYLPEFIK 110


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = +1

Query: 211 LLSKQYSTMAPATDWDEIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLID--VI 384
           +LSK+      A    + KR     ++ +     +RLS RN  ++  +L EL  ++    
Sbjct: 1   MLSKRGLNPVQAESRKKKKREQIKVREERAKRHEERLSHRNMSQMERQLSELTQLESSQA 60

Query: 385 FTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDFNH 516
                K+ L +LQ    +  +  +HG R+  V+  K    +  H
Sbjct: 61  LNAHDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKEAERQH 104


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/80 (25%), Positives = 35/80 (43%)
 Frame = +1

Query: 328 RNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVD 507
           R  I+ V  +I   L+ V       E L  +Q  + +    ++       VDL ++L V 
Sbjct: 283 REAIQGVLDMIYDALLSVTVQAPDYETLMVIQACRRLYKPAHIQFALPKVVDLNRKLIVG 342

Query: 508 FNHITTHIPEIVKGKDVQLI 567
           +NH   H P +++  D  L+
Sbjct: 343 YNHF-KHDPRVIRLHDKILL 361


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 443 SFISFISWSEVRYSLPSFVKITSINLSSINFVTISIQFR 327
           SF  FI +S +  +LP    I+ ++L S++ +T+SI  R
Sbjct: 140 SFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLR 178


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 427 IKEMKDELYVHGGRINTVDLAKEL 498
           I++  DEL VH G  N +DL K L
Sbjct: 8   IEDSADELSVHSGNDNEIDLEKGL 31


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 881 TVCXCHFLIN*MLLVYYQASKLELFMC 961
           T   CHF+ +   LV  QA K+ +++C
Sbjct: 15  TATSCHFISSENCLVLLQALKINIYLC 41


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 349 TKLIELKLIDVIFTNDGKEYL 411
           +KL+ELKL+D I T+D   +L
Sbjct: 783 SKLLELKLVDGIVTDDSDVFL 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,264,526
Number of Sequences: 5004
Number of extensions: 88643
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)