Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G12
         (1218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0133 + 895107-895280,895960-896271,896815-897081,897161-89...   114   2e-25
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    31   1.8  
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236...    31   2.4  
11_08_0026 + 27752519-27755441,27755538-27755923                       30   4.2  

>05_01_0133 +
           895107-895280,895960-896271,896815-897081,897161-897265
          Length = 285

 Score =  114 bits (274), Expect = 2e-25
 Identities = 70/209 (33%), Positives = 116/209 (55%), Gaps = 3/209 (1%)
 Frame = +1

Query: 259 EIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLID--VIFTNDGKEYLTSLQLIK 432
           E+  L    + AQ + ++ RLSERN +E+V KL E  +ID  ++ T  GKEY+TS  L  
Sbjct: 4   ELLELQRQLEAAQSARSSVRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKH 63

Query: 433 EMKDELYVHGGRINTVDLAKELNVDFNHITTHIPEIV-KGKDVQLISGYLITNYYLEKIA 609
           E+K E+    GR + VDL+  L VD  H+     ++V     + LI+G +++  Y + + 
Sbjct: 64  EIKMEIKKR-GRASLVDLSDILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVT 122

Query: 610 REVNEKLQLQGYISVGELTLHYDLPADLIQHSVLEKFLGKIIIGKQDPSEPRTFYTDEYI 789
            E+NEKLQ +  I++ E+     + ++L+  ++LE  LG I+ G+ +  +    YT  Y+
Sbjct: 123 EEINEKLQERSQIALAEIAAQLHIGSELVV-NILEPRLGTIVKGRLEGGQ---LYTPAYV 178

Query: 790 TRTKAKIRGALMGLLKPTPIAVIVNHCNL 876
           +R  A +RGA  G+  PT +  + N   L
Sbjct: 179 SRITAMVRGAARGITVPTNLPSVWNSLQL 207


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +1

Query: 496 LNVDFNHITTHIPEIVKGKDVQLISGYLITNYYLEKIAREVNEKLQLQGYISVGELTLHY 675
           LN++FN ++  IP  ++G    L S  L  NY    I   +     L GY+S+G  +L  
Sbjct: 158 LNLEFNQLSGPIPAELQGLR-SLGSMNLRRNYLSGLIPNSLFNNTPLLGYLSIGNNSLSG 216

Query: 676 DLPADLIQHSVLE 714
            +P  +    VL+
Sbjct: 217 PIPHVIFSLHVLQ 229


>04_03_0448 -
           16020773-16021066,16023040-16023291,16023470-16023605,
           16023713-16023937,16024467-16024851,16025142-16025421
          Length = 523

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +1

Query: 301 STTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQLIKEMKDELYV 456
           +T   R+  R+ + +V +LI + +   ++ +DG +  T  + I+E+ ++LYV
Sbjct: 467 TTNQARIDHRDVLPVVQRLINITMAIPLYYSDGIDGFTFGEGIQEVLEKLYV 518


>11_08_0026 + 27752519-27755441,27755538-27755923
          Length = 1102

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 469 INTVDLAKELNVDFNHITTHIPEIVKGK-DVQLISGYLITNYYLEKIAREVNEKLQLQGY 645
           I  +   + L ++FN ++  IP  ++G   + L+S  L  NY    I   +     L  Y
Sbjct: 146 IGNLTRLRVLYLEFNQLSGSIPAELQGLGSIGLMS--LRRNYLTGSIPNNLFNNTPLLAY 203

Query: 646 ISVGELTLHYDLPADLIQHSVLE 714
            ++G  +L   +PA +   S+LE
Sbjct: 204 FNIGNNSLSGSIPASIGSLSMLE 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,056,608
Number of Sequences: 37544
Number of extensions: 484280
Number of successful extensions: 1060
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)