Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G12
         (1218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...   142   5e-34
Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical pr...    33   0.31 
AL032618-2|CAA21485.1|  640|Caenorhabditis elegans Hypothetical ...    30   2.9  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    29   8.8  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score =  142 bits (344), Expect = 5e-34
 Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 1/241 (0%)
 Frame = +1

Query: 247 TDWDEIKRLAADFQKAQLSTTAQRLSERNCIEIVTKLIELKLIDVIFTNDGKEYLTSLQL 426
           T W +I++LA+D Q+ QLS ++++LSE NCIE++ KLI    IDV++T DG  Y+T   L
Sbjct: 2   TSWADIQKLASDLQRVQLSQSSKKLSEVNCIEVLQKLIASHRIDVVYTRDGHSYVTKNHL 61

Query: 427 IKEMKDELYVHGGRINTVDLAKELNVDFNHITTHIPEIVKGKDVQLIS-GYLITNYYLEK 603
             E+K+E    GGR +  D+A  LN+DF+HI      IV   D   IS   +    Y+ +
Sbjct: 62  ETEIKNECIAAGGRASLTDIAVALNIDFDHIEKTSRLIVSTDDEFTISNAEIFATEYVHR 121

Query: 604 IAREVNEKLQLQGYISVGELTLHYDLPADLIQHSVLEKFLGKIIIGKQDPSEPRTFYTDE 783
           +  E+   L  QG  +   L  H++L ++L+Q  ++EK       G  D     T YT  
Sbjct: 122 LRNELRTLLDEQGNQTTAALCKHWNLSSELLQSLLIEKLGSSDFQGVVDGD---TIYTSS 178

Query: 784 YITRTKAKIRGALMGLLKPTPIAVIVNHCNLSDRLXLSLFDQLNAPGVLPGKQAGAIYVP 963
           ++   +  +R  L+ L K TPI+ I     L+ +     F+ L + G +PG   G+   P
Sbjct: 179 FLNARQLVLRAILIALTKITPISTIQKRVGLTPKRFWIAFENLQSLGEIPGTLIGSRTSP 238

Query: 964 S 966
           S
Sbjct: 239 S 239


>Z49886-2|CAA90051.1|  268|Caenorhabditis elegans Hypothetical
           protein C06A1.2 protein.
          Length = 268

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 545 FTISGMCVVMWLKSTFNSLAKSTVFIRPPCTYNSSFISFISWSEVRYSLPSFV 387
           F+   MCVV+WL+    +L+K+ +F   PC+ +S    F   S   Y +P  +
Sbjct: 116 FSQISMCVVVWLEEEMGNLSKNMLFFFLPCSPSSILCLFRCAS--HYDIPIII 166


>AL032618-2|CAA21485.1|  640|Caenorhabditis elegans Hypothetical
           protein Y42A5A.2 protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
 Frame = +1

Query: 394 DGKEYLTSLQLIKEMKDELYVHGGRINTVDLAKELNVDFNHITTHIPEIVKGKDVQLISG 573
           DG+ +LT   L K M++   ++G  I+++   + LNV F  + T   +   GK   LI  
Sbjct: 96  DGRMHLTRSALDKAMENVAEMNGVLIHSICSYRHLNVTFYTLNT---QFGIGKSEVLIDA 152

Query: 574 YLITNYYLEKIAREVNEKLQLQGYISVGELTLHYDL----PADLIQHSVLEKFLGKIIIG 741
            +     +E+   E+ ++     +I VG     Y        D + H +++    + II 
Sbjct: 153 NMTE---MERKMSEMTDRRIKVNFICVGANNDTYSAVWHHSPDFVWHFIVDSGPIREIIE 209

Query: 742 KQDPSEPRTFYTDEYITRTKAKIRGALM 825
           K      R +Y D + T     +  A++
Sbjct: 210 KDRLQMTRGYYADCFQTYRNDNVSRAII 237


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 77  NNNYDLYDTSWQLIEIXRN 21
           N NY+LY T W L++I  N
Sbjct: 125 NGNYELYPTKWSLLDIAIN 143


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 77  NNNYDLYDTSWQLIEIXRN 21
           N NY+LY T W L++I  N
Sbjct: 261 NGNYELYPTKWSLLDIAIN 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,093,814
Number of Sequences: 27780
Number of extensions: 480200
Number of successful extensions: 1052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)