Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G12
         (1218 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.58 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.58 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.58 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.58 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   5.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   5.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   5.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   9.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +1

Query: 526 HIPEIVKGKDVQLISGYLITNYYLEKIAREVNE 624
           H+P+ ++G+    +   L+T Y+LE+++ ++ +
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGK 283


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = +1

Query: 526 HIPEIVKGKDVQLISGYLITNYYLEKIAREVNE 624
           H+P+ ++G+    +   L+T Y+LE+++ ++ +
Sbjct: 251 HMPKEIRGQLYYFLHKQLMTRYFLERMSNDLGK 283


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +2

Query: 89   SKRKIVDTIPYFESIILVRSISIETVIKILVIIL 190
            SKR I  T+P++  + ++  + + TV  ++ +++
Sbjct: 1597 SKRGIASTVPFYADVKVMLPLIVATVALVVAVVI 1630


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +2

Query: 89   SKRKIVDTIPYFESIILVRSISIETVIKILVIIL 190
            SKR I  T+P++  + ++  + + TV  ++ +++
Sbjct: 1593 SKRGIASTVPFYADVKVMLPLIVATVALVVAVVI 1626


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 724  GKIIIGKQDPSEPRT 768
            G +++GKQ PS+ +T
Sbjct: 1222 GSVVLGKQQPSQQQT 1236


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 598 EKIAREVNEKLQLQGYISVGELTLHYDLP 684
           E    E  E ++L G++S+ +  +HY+LP
Sbjct: 574 EDAMTEALEAVRL-GHMSINQAAIHYNLP 601


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 551 LPFTISGMCVVMWLKSTFNSL-AKSTVFI 468
           L  ++ G C V+W+ ST  SL   S +FI
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 98  FACYNTHNNNYDLYD 54
           ++ YN +NNNY+ Y+
Sbjct: 91  YSNYNNYNNNYNNYN 105


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 98  FACYNTHNNNYDLYD 54
           ++ YN +NNNY+ Y+
Sbjct: 324 YSNYNNYNNNYNNYN 338


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 551 LPFTISGMCVVMWLKSTFNSL-AKSTVFI 468
           L  ++ G C V+W+ ST  SL   S +FI
Sbjct: 68  LIMSLVGNCCVIWIFSTSKSLRTPSNMFI 96


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 391 NDGKEYLTSLQLI 429
           NDG  YLT +QLI
Sbjct: 363 NDGSLYLTKVQLI 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,492
Number of Sequences: 438
Number of extensions: 6403
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41693346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)