Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G11
(1229 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 33 0.61
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.80
02_05_0686 - 30900748-30902167,30903442-30904742 32 1.1
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 31 1.4
01_03_0005 + 11568545-11569119,11569179-11569191 30 3.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 7.5
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152... 29 7.5
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 9.9
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 32.7 bits (71), Expect = 0.61
Identities = 30/127 (23%), Positives = 35/127 (27%), Gaps = 9/127 (7%)
Frame = +2
Query: 497 PXPRGXGGXXXGXXPXPPXKKPXPP---VXGGGXGVXPPXXXXXXXPQK-RGETXXKXXX 664
P P G P PP P PP + G + PP P G
Sbjct: 237 PKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPPPRPLQPSPLAGTNEFANKQ 296
Query: 665 KXGPKRXXTXKRXXXGGFPXXPPPPKXXKKKXPXXXGGEXPGXXK-----KTXGFPPXNP 829
G T G P PPPP + E PG + + PP P
Sbjct: 297 TIGEGASLTDSAQAKGALP--PPPPGLIRNSSEMQNANEVPGLKEDDKVTRILPLPPPQP 354
Query: 830 XGAPXXP 850
P P
Sbjct: 355 SHLPPLP 361
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.80
Identities = 19/48 (39%), Positives = 20/48 (41%)
Frame = +2
Query: 497 PXPRGXGGXXXGXXPXPPXKKPXPPVXGGGXGVXPPXXXXXXXPQKRG 640
P PRG GG G P PP P PP+ G G PP P G
Sbjct: 1187 PPPRGHGGV--GGPPTPPG-APAPPMPPGVPGGPPPPPGGRGLPAPPG 1231
Score = 30.7 bits (66), Expect = 2.5
Identities = 33/122 (27%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Frame = +2
Query: 497 PXPRGXGGXXXGXXPXPPX-------KKPXPPVXGGGXGVXPPXXXXXXXPQKRGETXXK 655
P P G G P PP P PP+ G GV PP P G
Sbjct: 1109 PPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP-------PPVGGLGGPP 1161
Query: 656 XXXKXGPKRXXTXKRXXXGGFPXXPPPPK--XXKKKXPXXXGGEXPGXXKKTXGFPPXNP 829
R T GG PPPP+ P G P G PP P
Sbjct: 1162 APPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPP 1221
Query: 830 XG 835
G
Sbjct: 1222 GG 1223
Score = 28.7 bits (61), Expect = 9.9
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = +1
Query: 730 PPPXXXQKKXAXXXXGGXPXGXXKNPGXPPXKPPXGXXFXXPAXXXKXXPFFPXGKGGXX 909
PPP P G P PP G P + P GG
Sbjct: 1124 PPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVA 1183
Query: 910 XXPPXGXXXXGGGXPPXGGXXXXPPXXP 993
PP G G PP PP P
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPPMPP 1211
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/46 (39%), Positives = 18/46 (39%)
Frame = +3
Query: 912 KXPXGXXPXGGRXPPXRGXGXXPPPXXPXGXPFXGKXXXXNPPPXK 1049
K P P G PP G PPP P G GK PPP K
Sbjct: 342 KGPPPPPPAKGPPPPPPPKGPSPPPPPPPG----GKKGGPPPPPPK 383
Score = 31.1 bits (67), Expect = 1.9
Identities = 21/63 (33%), Positives = 21/63 (33%)
Frame = +1
Query: 814 PPXKPPXGXXFXXPAXXXKXXPFFPXGKGGXXXXPPXGXXXXGGGXPPXGGXXXXPPXXP 993
PP PP P K P P KG PP G PP GG PP P
Sbjct: 327 PPPPPPKAAP---PPPPPKGPPPPPPAKGPPPPPPPKGPSPPP--PPPPGGKKGGPPPPP 381
Query: 994 XXG 1002
G
Sbjct: 382 PKG 384
Score = 29.9 bits (64), Expect = 4.3
Identities = 26/88 (29%), Positives = 26/88 (29%)
Frame = +1
Query: 730 PPPXXXQKKXAXXXXGGXPXGXXKNPGXPPXKPPXGXXFXXPAXXXKXXPFFPXGKGGXX 909
PPP K A P PP PP G PA P P G
Sbjct: 313 PPPPPPPKPAA-----AAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPP-PKGPSPPP 366
Query: 910 XXPPXGXXXXGGGXPPXGGXXXXPPXXP 993
PP G PP GG PP P
Sbjct: 367 PPPPGGKKGGPPPPPPKGG-ASRPPAAP 393
Score = 29.9 bits (64), Expect = 4.3
Identities = 23/79 (29%), Positives = 26/79 (32%)
Frame = +2
Query: 539 PXPPXKKPXPPVXGGGXGVXPPXXXXXXXPQKRGETXXKXXXKXGPKRXXTXKRXXXGGF 718
P PP K PP G PP P +G + G K GG
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK----------GGP 377
Query: 719 PXXPPPPKXXKKKXPXXXG 775
P PPPPK + P G
Sbjct: 378 P--PPPPKGGASRPPAAPG 394
Score = 29.1 bits (62), Expect = 7.5
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 918 PXGXXPXGGRXPPXRGXGXXPPPXXPXGXPFXGKXXXXNPPPXKKKXXPXGXXP 1079
P P PP PPP P G P PPP K P P
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 31.5 bits (68), Expect = 1.4
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = +2
Query: 530 GXXPXP-PXKKPXPPVXGGGXGVXPPXXXXXXXPQKRGETXXKXXXKXGPKRXXTXKRXX 706
G P P P KP PP G PP P K G K GPK +
Sbjct: 156 GPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKPG 215
Query: 707 XGGFPXXPPP 736
P P P
Sbjct: 216 PKPKPGPPQP 225
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Frame = +1
Query: 802 NPGXPPXKPPXGXXFXXPAXXXKXXPFFPXGKGG-------XXXXPPXGXXXXGGGXPPX 960
NP P PP P P +P G GG PP GGG
Sbjct: 48 NPCNPSYYPPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTG 107
Query: 961 GGXXXXPP 984
GG PP
Sbjct: 108 GGGIYYPP 115
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/76 (28%), Positives = 22/76 (28%)
Frame = +1
Query: 730 PPPXXXQKKXAXXXXGGXPXGXXKNPGXPPXKPPXGXXFXXPAXXXKXXPFFPXGKGGXX 909
PPP A P G PP PP PA P G G
Sbjct: 322 PPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAA-----PAAPR------PPGPGPGP 370
Query: 910 XXPPXGXXXXGGGXPP 957
PP GGG PP
Sbjct: 371 PPPPGAAGRGGGGPPP 386
>02_05_0962 +
33114226-33114684,33114806-33114853,33115166-33115286,
33115760-33116008,33116149-33116302,33116493-33116985,
33117524-33117596,33118285-33118343
Length = 551
Score = 29.1 bits (62), Expect = 7.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 506 GGGGFFXXXKTPPPPP 459
GGGGF PPPPP
Sbjct: 57 GGGGFLRLRSAPPPPP 72
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.7 bits (61), Expect = 9.9
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Frame = +2
Query: 497 PXPRGXGGXXXGXXPXPPXKKPXPP--VXGGGXGVXPP 604
P P G P PP P PP GGG G PP
Sbjct: 715 PEPPVYAPYPPGITPSPPEYAPEPPPGPPGGGGGYLPP 752
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.152 0.518
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,147,610
Number of Sequences: 37544
Number of extensions: 441490
Number of successful extensions: 1331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3782886900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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