Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G09
(1197 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 56 1e-08
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 35 0.026
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 34 0.034
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 34 0.045
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 31 0.24
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 30 0.73
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 29 0.97
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 1.3
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 1.3
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 29 1.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 28 2.2
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 28 2.2
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 6.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 6.8
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 27 6.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 6.8
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 9.0
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 9.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 9.0
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 55.6 bits (128), Expect = 1e-08
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Frame = +2
Query: 356 ADSISKILGS--SKPKNKKTLVLSXAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEE 529
AD I+ IL ++ + T VLS +KK + ++K EK ++ + +++KE
Sbjct: 68 ADDIADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKL--RTSRRRERLRKEM 125
Query: 530 INVEPPAKKVKHEKPSIRIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDR 709
+ V E ER L +IA +GVVQLFNAVR Q ++ ++R
Sbjct: 126 VGRVTSVVAVNAETAKALFT-------HERELRRIARRGVVQLFNAVRTAQ--LQSSLNR 176
Query: 710 NDLSEGK--KEKILKKFDKRTFLDTLMGQ 790
++S G+ +E+ +K+ K +FLD + Q
Sbjct: 177 ENISGGRTAREQKVKELSKASFLDLIKSQ 205
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 34.7 bits (76), Expect = 0.026
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 368 SKILGSSKPKN-KKTLVLSXAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVE 541
+K++G+ KN KKT V+ + +EI K + K + G N +S VKKEE + +
Sbjct: 81 AKVMGNGGLKNGKKTAVVKEEEDFNEIAKPSPKHKRVSKANGSKNGAKSAVKKEESDTD 139
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 34.3 bits (75), Expect = 0.034
Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 1/172 (0%)
Frame = +2
Query: 359 DSISKILGSSKPKNKKTLVLSXAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINV 538
++ +K++ P T + AK K++ E ++ E + +K++ I
Sbjct: 820 ETFTKLVSVEHPPYSPTSIEQRAKMAKNTTKRQLERAIQAQIEYE-KSVAAKLEDARIQR 878
Query: 539 EPP-AKKVKHEKPSIRIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRND 715
E A+++ E+ ++ K ++RER L + K ++ ++QQK+ E +M +D
Sbjct: 879 EKEKARRLAEEEALLKEK-----QERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSD 933
Query: 716 LSEGKKEKILKKFDKRTFLDTLMGQSKSIVVDEHVKSLKDEVKDETDRPKWN 871
E + K KK K+ + S S V ++ L D +++T + + N
Sbjct: 934 DEEKQSGKKKKKDRKKRKSKSKQESSDSGVSEDDEIPLSD-ARNKTKKRRVN 984
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 33.9 bits (74), Expect = 0.045
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Frame = +2
Query: 428 KKHSEIVKKEKEEKPSFEVIGEVNE------IESKVKKEEINVEPPAKKVKHEKPSIRIK 589
K+ SE+ +KE+ +K +FE G V++ I+S + E E P K+++ + R +
Sbjct: 219 KRISELEEKERIQKKAFEDKGLVSDQDVNHSIDSDDQSEHEQAETPIPSSKNKRKT-RSQ 277
Query: 590 PNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSE 724
N + + RE L + K +L + ++ +I K++ + D +E
Sbjct: 278 RNKIRQRREEELRLLEQKKNEELLRTI-DKAPAISKKLQQKDKAE 321
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 31.5 bits (68), Expect = 0.24
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Frame = +2
Query: 404 KTLVLSXAKKHSEI---VKKEKEEKPSFEVIGE-----VNEIESKVKKEEINVEPPAKKV 559
+TL+ + K S + + KEEKP+ E + E V E++SK+ + + E K+V
Sbjct: 15 RTLIRAPINKRSFLWYSTEAAKEEKPAEEKVAETENVDVKELQSKLSELKSKYEAKDKEV 74
Query: 560 KHEKPSIRIK-------PNVLEKDRERLLNKIATKGVVQLFNAVRNQQK--SIEKEMDRN 712
K SIR N +++D E+ K L ++V N ++ SI E RN
Sbjct: 75 AELKGSIRQSLADYRNLENRMKRDMEQTRAFAVQKLTKDLLDSVDNLERALSIVPEEKRN 134
Query: 713 DLSEGK 730
+ K
Sbjct: 135 NRESNK 140
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.9 bits (64), Expect = 0.73
Identities = 18/75 (24%), Positives = 43/75 (57%)
Frame = +2
Query: 482 VIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKDRERLLNKIATKGVVQLF 661
++ ++ +++ + KK++ + KK+ H + S++ K N L E L+++ K + L
Sbjct: 796 LVQQIRKLKDENKKDQSGTDKLMKKIYHCEQSLKEKTNSL----ETLVSE--KKELKNLL 849
Query: 662 NAVRNQQKSIEKEMD 706
+A R +K+I+ E++
Sbjct: 850 DAERRSKKAIQLELE 864
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 29.5 bits (63), Expect = 0.97
Identities = 19/94 (20%), Positives = 48/94 (51%)
Frame = +2
Query: 578 IRIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFD 757
+R++ ++ +E+ +NK + + A+R +Q+ +++ +D+ E +K K+F+
Sbjct: 191 MRVQKANIDYKKEKTVNKDVGGALKK--KALRLRQQQMQQISSWDDVDEEVDDKRKKRFN 248
Query: 758 KRTFLDTLMGQSKSIVVDEHVKSLKDEVKDETDR 859
K L + + E + LKD++ +E ++
Sbjct: 249 KIVVLKHIFTLEELDKTPELLIDLKDDITEEAEK 282
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 1.3
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Frame = +2
Query: 365 ISKILGSSKPKNKKT-LVLSXAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVE 541
+ KI K ++KK L L+ ++ + E+ + + + + E++ K+EE ++
Sbjct: 588 LKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLK 647
Query: 542 PPAKKVKHEKPSIRIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLS 721
+K + E + + +K+RE+ L K + + R Q+ + +E ++ L
Sbjct: 648 REQEKKQQELERQKREEKQKQKEREKKLKKQQQEADRE--KMAREQR--LREEEEKRILE 703
Query: 722 EGK-KEKILKKFDKRTFLDTLMGQSK 796
E K +EK+ K+ ++R + L +S+
Sbjct: 704 ERKRREKLDKEEEERRRRELLEKESE 729
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 506 ESKVKKEEINVEPPAKKVKHEKPSIRIK 589
E ++K EE VEPP+KK+ + +PS I+
Sbjct: 1658 EKRMKNEEF-VEPPSKKLANSEPSKEIR 1684
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.1 bits (62), Expect = 1.3
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Frame = -1
Query: 951 ETLFHSSTDSLSQSFILAPIIKSSLKAFHLGLSVSSLTSSF--KLFTCSSTTIDLLCP-- 784
+T F SS +S+++S KSS +GL +S+L +L + ID C
Sbjct: 113 DTAFDSSEESITKSS------KSSFSVLDIGLPMSALQRKMMHRLVQYFAFCIDHFCTGP 166
Query: 783 --IRVSKKVLL-----SNFFKIFSFF------PSDKSFRSISFSIDFC*FLTALNNCTTP 643
R+ +K+ L N K S + PS + S+D F + N +
Sbjct: 167 SDSRIQEKIRLFIQSAHNIAKHPSLYDTEVRNPSAAESTNSHVSLDASNFSSYAENSSKF 226
Query: 642 L-VAILFNNLSLSFSKTFGLILIDGF 568
L + LF NLS S+SKTF L + + F
Sbjct: 227 LFLQELFKNLSPSYSKTFFLFISNQF 252
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.3 bits (60), Expect = 2.2
Identities = 32/166 (19%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Frame = +2
Query: 377 LGSSKPKNKKTLVLSXAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKK 556
L + K +++ +L + E ++ K ++ + + E E K ++++N +
Sbjct: 329 LETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEAL-- 386
Query: 557 VKHEKPSIRIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSE---- 724
+ H R K + + E L K G+++ ++V Q+ + +E ++ + +
Sbjct: 387 ISHYDDDFRAKELKISRLSESLREKA---GLLEFQSSVSEQRDLLYQEQIQSSIKDMENV 443
Query: 725 -GKKEKILKKFDK-RTFLDTLMGQSKSIVVDEHVKSLKDEVKDETD 856
K E ++++ ++ + L+ + SK + +DE +K LKDE + D
Sbjct: 444 FRKNEYLMEELNELKNNLE--VESSKVLRLDEEMKCLKDEQLSQFD 487
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 28.3 bits (60), Expect = 2.2
Identities = 21/90 (23%), Positives = 40/90 (44%)
Frame = +2
Query: 440 EIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKDRER 619
++ K +E + E ++E E + +E + + +++ K + EK+ E
Sbjct: 126 QVTFKAEERRKREEKSSNLDEEELRKSRETVYRDATGRRIDLVLARKEAKRKLKEKEEEA 185
Query: 620 LLNKIATKGVVQLFNAVRNQQKSIEKEMDR 709
K +GVVQ+ QQK KE++R
Sbjct: 186 RRQKEQQQGVVQV-----RQQKEYLKELER 210
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 665 AVRNQQKSIEKEMDRNDLSEGKKEKILKKFD---KRTFLDTL 781
A +N + ++K+ +L ++EK KK D KR FLDTL
Sbjct: 98 ASKNIELKLQKKEKEEELRNLEEEKAKKKKDANLKRKFLDTL 139
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 6.8
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = -1
Query: 516 TFDSISFTSPITSKLGFSSFSFFTISECFLALDKTNVFLFLGLLEPKIFE-IESAHPSFA 340
T DS SFTS L SS S S+ +D T + L+P I ++ PS +
Sbjct: 267 TIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLS 326
Query: 339 KRRXXXXXXXXXXXXXXSGFSSTSLLVTDXCSLSLDASTLDXVAETET 196
F+ T +TD S+ ++ ++ + ETET
Sbjct: 327 SALPTTYPSSLSTEVEVEYFTKT---ITDTSSIVTYSTGVETLYETET 371
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +2
Query: 359 DSISKILGSSKPKNKKTLVLSXAKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKK-EEIN 535
D+ K L ++ K T ++ ++ +EI+KKE+E + + E E EI +++ E+
Sbjct: 321 DADRKPLANAYIKALPTSIIVINERDAEIIKKEEELEAAKE---EEEEIWRNMEQLEDTE 377
Query: 536 VEPPAKKVK 562
+ P+K++K
Sbjct: 378 DKKPSKRIK 386
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 581 RIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEK-EMDRN-DLSEGKK 733
++KP+ L K+ + LLN +V V + + IE ++D+N ++SEG++
Sbjct: 275 QLKPSFLPKNTDDLLNGTDDNNIVLREVKVSFENEKIESDDLDKNEEISEGEE 327
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.2 bits (55), Expect = 9.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 796 FTLSHKGIQESSLIKFFQNLFFLSFRQVIPIHFFLYRFLLISY 668
FT S + L+ FF LFFLSF FFL + ++ +
Sbjct: 105 FTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYF 147
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 591 GLILIDGFSCFTFLAGGSTLISSFLTFD 508
GL IDGF + + GG L+ +F + D
Sbjct: 278 GLTSIDGFPVISEIGGGLVLLGNFSSID 305
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 9.0
Identities = 30/114 (26%), Positives = 52/114 (45%)
Frame = +2
Query: 491 EVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKDRERLLNKIATKGVVQLFNAV 670
E+N+ + K+EE E P+K + EK +IR+ V D E L + + K ++ N
Sbjct: 538 EINDGLQQKKEEEDEDEVPSKIITDEK-TIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPR 596
Query: 671 RNQQKSIEKEMDRNDLSEGKKEKILKKFDKRTFLDTLMGQSKSIVVDEHVKSLK 832
R E ++ D+ K L F K ++ G+ ++ +D + SLK
Sbjct: 597 RLVLIHASTE-EKEDMK--KTCASLSAFTKDVYIPN-YGEIINVSIDVNAFSLK 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,855
Number of Sequences: 5004
Number of extensions: 58246
Number of successful extensions: 286
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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