Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G09
         (1197 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    30   0.15 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    26   2.5  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   4.4  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
 Frame = +2

Query: 425  AKKHSEIVKKEKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPS----IRIKP 592
            A+ HS+  K    E    E     +   +K    + NV+   +++     S    ++ K 
Sbjct: 843  ARTHSDPEKVRALEAKVAECKQAFDSSSTKADAMQKNVDRYTEQINEITNSKVKVLQTKI 902

Query: 593  NVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKRTFL 772
            N L K  ++L   I+ K  V++  + RN QKS +K     D  E  +  I K  D+RT L
Sbjct: 903  NGLGKQIDKLSANIS-KLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQL 961

Query: 773  D 775
            +
Sbjct: 962  E 962


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -1

Query: 954 VETLFHSSTDSLSQSFILAPIIKSSLKAFHLGLSVSSLTS-SFKLFTCSSTTIDLLCPIR 778
           + T FH++ DSL  S +LA + K       +    S L++ S ++ T S  + +  C   
Sbjct: 612 IYTDFHAAFDSLPHSLLLAKLSKLGFGDGIISWLSSYLSNRSCRVKTGSYLSEEFFCTSG 671

Query: 777 VSKKVLLSNFFKIFSFFPSD 718
           V +  +LS    +FS F +D
Sbjct: 672 VPQGCVLSPL--LFSLFIND 689


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 93  HLLHQSXTCCALFGVXSK 146
           H+     +CCALFGV SK
Sbjct: 48  HVAAGFGSCCALFGVQSK 65


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,122
Number of Sequences: 2352
Number of extensions: 12273
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 135704004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)