Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G09
         (1197 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   2.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   3.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   4.0  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
 Frame = +2

Query: 410 LVLSXAKKHSEIVK----KEKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPS 577
           L+L  A  + EI      +E   K   + IGE       V+  E    P  +K+K     
Sbjct: 15  LILQIALVYGEISDIDEFREMTSKYRKKCIGETKTTIEDVEATEYGEFPEDEKLKCYFNC 74

Query: 578 IRIKPNVLEKDRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSE 724
           +  K NV++K   ++   +  K + + F  +  +       +D +D  E
Sbjct: 75  VLEKFNVMDKKNGKIRYNLLKKVIPEAFKEIGVEMIDSCSNVDSSDKCE 123


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -1

Query: 513 FDSISFTSPITSKLGFSSFSFFTISECFLALDKTNVFLFLGLLEPKI 373
           F SIS T  +  ++GF    ++  S   + +   + +L +    P+I
Sbjct: 218 FSSISITFKLAREMGFFMMDYYIPSILIVVISWVSFWLHMDASPPRI 264


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 574 INKN*AKRLRKGQRKIIE*NSH*RCSTIIQCSKK 675
           I++N  K+L      I E N H + S ++QC  K
Sbjct: 92  IDENSVKQLVSDCSTISEENPHLKASKLVQCVSK 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,371
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)