Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G08
(1320 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 41 3e-04
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.012
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.050
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.15
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.36
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.36
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.47
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 29 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 3.3
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 4.4
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 7.6
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 41.1 bits (92), Expect = 3e-04
Identities = 36/94 (38%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = -3
Query: 1033 GXXGXXPPPPPXGXXGGXGXPXXPXGGGXG-GGXXGGFXGGEXPGXXXXPXGGGPPPXXG 857
G G P P G GG G GG G GG GGF GG PG GGGP G
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG--PGGF----GGGPGGFGG 249
Query: 856 XXFLXXXXGGGGPXGKXPXPXPXXGXGPXGXXGP 755
GGGP G G GP G GP
Sbjct: 250 GL----GGFGGGPGG--------FGGGPGGHGGP 271
Score = 33.9 bits (74), Expect = 0.050
Identities = 25/72 (34%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = -1
Query: 1026 GEXXPPPPPXGXXGXXXXXXXRPGGXXGG-GPXGGXPGGXXXGXXXXXGGXXPPXXGGXX 850
G PPP P G G G GG G GG PGG G GG GG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGE--GHHHGGHGGFGGGPGGFEGGPGGFGGGPG-GFGGGLG 252
Query: 849 FWXXXPGGGAXG 814
+ PGG G
Sbjct: 253 GFGGGPGGFGGG 264
Score = 33.1 bits (72), Expect = 0.088
Identities = 29/81 (35%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Frame = -3
Query: 952 GXGGGXXGGFXGGEXPGXXXXPXG-GGPPPXXGXXFLXXXXG--GGGPXGKXPXPXPXXG 782
G GG GGF GG G P G GG G G GGGP G P G
Sbjct: 184 GHNGGGFGGFGGGSG-GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG-GFG 241
Query: 781 XGPXGXXGPQXFSRGXPXXXG 719
GP G G G P G
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFG 262
Score = 28.7 bits (61), Expect = 1.9
Identities = 30/95 (31%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Frame = -2
Query: 1052 GXXXXXGXXGKXPPPPPXGXKX-GXXXXXXXXRGGXXG--GXPGGVXRGGXPXXXXXPXG 882
G G PPP P G G GG G G PGG G P G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG--------PGG 239
Query: 881 GXXPPXXGGXXFGXXXRGGGPXGXXPPXGXLXGXG 777
P GG G GGGP G G G G
Sbjct: 240 FGGGP--GGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 27.5 bits (58), Expect = 4.4
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Frame = -1
Query: 1128 PXPGXXGGGGXXXXXXXXXXXXXXXGXXPXXGXXGEXXPPPPPXGXXGXXXXXXXRPGGX 949
P PG GG G G P G P G G PGG
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG- 260
Query: 948 XGGGPXG-GXPG 916
GGGP G G PG
Sbjct: 261 FGGGPGGHGGPG 272
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.012
Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Frame = +3
Query: 876 PPPXGXXXXPGXSP-PXNPPXX----PPPXPPPXGXXG---XPXPPFXPXGGGGG 1016
PPP P +P P PP PPP PPP G G P PP P GG
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 33.9 bits (74), Expect = 0.050
Identities = 22/77 (28%), Positives = 23/77 (29%)
Frame = +3
Query: 822 PPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXPPPXPPPXGXXGXPXPPFXPX 1001
PPPP P P P G PP PP PPP P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP-----PPPPPPAVS 786
Query: 1002 GGGGGXFPXXPXGXXXP 1052
GG + P P
Sbjct: 787 AGGSRYYAPAPQAEPEP 803
Score = 33.5 bits (73), Expect = 0.067
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 467 PPIXPKXXFFPXPXGGGGPXPPXXFXXXGXPXPPPQGGAXXXGP 336
PP P P P P PP G P PPP G GP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 1039 PXGXXGXXPPPPPXGXXGGXGXPXXP 962
P G PPPPP G G P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 1024 GXXPPPPPXGXXGGXGXPXXP 962
G PPPPP G G P P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.050
Identities = 29/114 (25%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Frame = +3
Query: 663 RXXGGGXXXPPPXGGXXGXPXXXGXPREKXWGPXXPXGPXPXKGXGXGXXPXGPPP--PX 836
R G PP G P PR P P P P PPP P
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPP---PRS---APSTGRQPPPLSSSRAVSNPPAPPPAIPG 397
Query: 837 XXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXPPPXPPPXGXXGXPXPPFXP 998
P P PP PP PP PP PP P
Sbjct: 398 RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 33.9 bits (74), Expect = 0.050
Identities = 21/73 (28%), Positives = 21/73 (28%)
Frame = +1
Query: 739 PGKXXGAXGPXXXPXPXRXPXGGXXPXGPPPRXXXPKXXPPXXGGXXPPXGXXXXXGXPP 918
P A P P P PPP P PP G PP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI------PGRSAPALPPLGNASRTSTPP 416
Query: 919 RXTPPGXPPXXPP 957
TPP PP PP
Sbjct: 417 VPTPPSLPPSAPP 429
Score = 32.3 bits (70), Expect = 0.15
Identities = 28/106 (26%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Frame = +3
Query: 690 PPPXGGXXGXPXXXGXPREKXWGPXXPXGPXPXKGXGXGXXPXGPPPPXXXXKXXXPXXG 869
PPP G P G P P P P G P P G
Sbjct: 315 PPPSRRNRGKPPI-GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 870 GGPPPXGXXXXPGXSPPXNPPXXP---PPXPPPXGXXGXPXPPFXP 998
PPP +PP PP P P PP G P P
Sbjct: 374 RQPPPLSSSRAVS-NPPAPPPAIPGRSAPALPPLGNASRTSTPPVP 418
Score = 30.3 bits (65), Expect = 0.62
Identities = 29/112 (25%), Positives = 30/112 (26%), Gaps = 14/112 (12%)
Frame = +3
Query: 759 PXXPXGPXPXKGXGXGXXPXGPPPPXXXXKXXXPXXGGG----PPPXGXXXXPGXSP-PX 923
P P P P G P PP P PPP +
Sbjct: 251 PAPPPIPPPSNGT-VSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKK 309
Query: 924 NPPXXPPPX-----PPPXGXXGX----PXPPFXPXGGGGGXFPXXPXGXXXP 1052
PP PPP PP G P PP P G P P G P
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361
Score = 30.3 bits (65), Expect = 0.62
Identities = 23/86 (26%), Positives = 24/86 (27%)
Frame = +3
Query: 777 PXPXKGXGXGXXPXGPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXPPPXPP 956
P G P PPPP P PP G P PP + P PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPL-----PPQGRSAPP-PPPPRSAPSTGRQPPP 378
Query: 957 PXGXXGXPXPPFXPXGGGGGXFPXXP 1034
PP P G P P
Sbjct: 379 LSSSRAVSNPPAPPPAIPGRSAPALP 404
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/68 (27%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Frame = +3
Query: 813 PXGPPPPXXXXKXXXPXXGGG---------PPPXGXXXXPGXSPPXNPPXXPPPXPPPXG 965
P PPPP + P G PPP PP PPP P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 966 XXGXPXPP 989
G PP
Sbjct: 371 STGRQPPP 378
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 927 PPXXPPPXPPPXGXXGXPXPPFXPXGG 1007
PP PPP PPP G PP P G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 31.5 bits (68), Expect = 0.27
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 882 PXGXXXXPGXSPPXNPPXXPPPXPPP 959
P G P P PP PPP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 870 GGPPPXGXXXXPGXSPPXNPPXXPPPXPP 956
G PPP PG PP PP PP PP
Sbjct: 7 GNPPPP--PPPPGFEPPSQPP---PPPPP 30
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 915 PPXNPPXXPPPXPPPXGXXGXPXPPFXP 998
PP NPP PPP PP P PP P
Sbjct: 5 PPGNPP--PPPPPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Frame = +3
Query: 876 PPPXGXXXXPGXSP-PXNPPXXPPPXPPPXGXXGXPXP 986
PPP P P P PP PPP P P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/59 (27%), Positives = 16/59 (27%)
Frame = +3
Query: 813 PXGPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXPPPXPPPXGXXGXPXPP 989
P PP PPP P S P P P PPP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Frame = +3
Query: 870 GGPPPXGXXXXPGXSPPXN-PPXXPPPXPPPXGXXGXPXPPFXPXGGGGGXFPXXP 1034
GG P P P PP P PPP P P P G P P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.1 bits (67), Expect = 0.36
Identities = 18/54 (33%), Positives = 18/54 (33%)
Frame = -3
Query: 1039 PXGXXGXXPPPPPXGXXGGXGXPXXPXGGGXGGGXXGGFXGGEXPGXXXXPXGG 878
P G P G GG GG GG GGF GG G GG
Sbjct: 124 PKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Score = 30.3 bits (65), Expect = 0.62
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 997 GXXGGXGXPXXPXGGGXGGGXXGGFXGGEXPGXXXXPXGG 878
G G G GG GGG GGF GG G GG
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Frame = -3
Query: 997 GXXGGXGX-PXXPXGGGXGGGXXGGFXGGEXPGXXXXPXGG 878
G GG G GGG GG GG GG G GG
Sbjct: 149 GSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 26.6 bits (56), Expect = 7.6
Identities = 23/72 (31%), Positives = 23/72 (31%), Gaps = 4/72 (5%)
Frame = -3
Query: 1015 PPPPPXGXXGGXGXPXXPXGGGXGGGXXGGFXG--GEXPGXXXXPXGGGPPPXXGXXFLX 842
P P G G P G G GG GG G G G GGG G
Sbjct: 117 PKPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRG 176
Query: 841 XXXGG--GGPXG 812
GG GG G
Sbjct: 177 GSRGGFRGGSRG 188
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.47
Identities = 23/89 (25%), Positives = 24/89 (26%)
Frame = +1
Query: 691 PPPXGGXXVXPXXGGXPGKXXGAXGPXXXPXPXRXPXGGXXPXGPPPRXXXPKXXPPXXG 870
P P G V P G P + P P P G PP PP
Sbjct: 1077 PAPSGAPPV-PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPV 1135
Query: 871 GXXPPXGXXXXXGXPPRXTPPGXPPXXPP 957
P PP P G PP P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/76 (26%), Positives = 20/76 (26%), Gaps = 6/76 (7%)
Frame = +3
Query: 777 PXPXKGXGXGXXPXGPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXP----- 941
P P G P P P G P P P P P P
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVA 1110
Query: 942 -PPXPPPXGXXGXPXP 986
PP P P G P P
Sbjct: 1111 VPPVPAPSGAPPVPKP 1126
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +3
Query: 822 PPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPX-NPPXXPPPXPPPXGXXGXPXP 986
PP P P PP P +PP P PP P P G P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPV---PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 27.5 bits (58), Expect = 4.4
Identities = 21/77 (27%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Frame = +3
Query: 768 PXGPXPXKGXGXGXXPXGPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXPPP 947
P G P P P P P G P P P P P PPP
Sbjct: 1155 PSGAPPVPKPSVAAPPV-PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Query: 948 ---XPPPXGXXGXPXPP 989
P P G P P
Sbjct: 1214 STAPPVPTPSAGLPPVP 1230
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/72 (33%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = -3
Query: 1024 GXXPPPPPXGXXG-GXGXPXXPXGGGXGGGXXGGFXGGEXPGXXXXPXGGGPPPXXGXXF 848
G PPPP G G G P G G GG F G PG P F
Sbjct: 72 GNAAPPPPGAEGGPGAGFGGFP-GAGPGGARTFHFNMG-GPGGAQFFSASDPNDIFERVF 129
Query: 847 LXXXXGGGGPXG 812
GGGG G
Sbjct: 130 GHAFAGGGGMGG 141
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/78 (25%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Frame = +3
Query: 768 PXGPXPXKGXGXGXXPXGPPPPXXXXKXXXPXXGGGPP-PXGXXXXPGXSPPXNPPXXPP 944
P P P P PP P PP P P PP P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPP---RPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 945 PXPPPXGXXGXPXPPFXP 998
PP PP P
Sbjct: 182 KSPPSAPSLPSAVPPMPP 199
Score = 27.1 bits (57), Expect = 5.8
Identities = 21/84 (25%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Frame = +3
Query: 759 PXXPXGPXPXKGXGXGXXPXGPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXX 938
P P P P PP P P PP P PP P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP-SAPSLPSAVPPMPPKVP 202
Query: 939 PPP-XPPPXGXXGXPXPPFXPXGG 1007
PPP P F P G
Sbjct: 203 PPPLSQAPVANTSSRPSSFAPPAG 226
Score = 26.6 bits (56), Expect = 7.6
Identities = 21/87 (24%), Positives = 22/87 (25%), Gaps = 1/87 (1%)
Frame = +1
Query: 742 GKXXGAXGPXXXPXPXRXPXGGXXPXGPPPRXXXPKXXPPXXGGXXP-PXGXXXXXGXPP 918
GK + P P P P PPR P PP P P P
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPR---PSIPPPSPASAPPIPSKAPPIPSSLP 172
Query: 919 RXTPPGXPPXXPPRXXXXXXXXPXXXP 999
P P PP P P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPP 199
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 960 PGGXXGGGPXGGXPGGXXXG 901
PGG GG P GG PGG G
Sbjct: 619 PGGMPGGAP-GGAPGGADNG 637
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Frame = -1
Query: 957 GGXXGGG-PXGGXPGGXXXGXXXXXGGXXP 871
G GGG P GG PGG GG P
Sbjct: 439 GSFPGGGFPGGGFPGGSYNSQGFGMGGGFP 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,756,551
Number of Sequences: 5004
Number of extensions: 65350
Number of successful extensions: 450
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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