Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G08
         (1320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.21 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   7.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 867 GGGPPPXGXXXXPGXSPPXNPPXXPPPXPPP 959
           G  P P      P    P NP   PPP  PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 27.1 bits (57), Expect = 0.36
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 870 GGPPPXGXXXXPGXSPPXNPPXXPPPXPPPXGXXGXP 980
           G P P         +P    P  P   PPP G  G P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.8 bits (54), Expect = 0.84
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 804 GXXPXGPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNP 929
           G  P     P    +   P    GPPP G    PG  P  NP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGG---PPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.5
 Identities = 13/52 (25%), Positives = 15/52 (28%)
 Frame = +3

Query: 714 GXPXXXGXPREKXWGPXXPXGPXPXKGXGXGXXPXGPPPPXXXXKXXXPXXG 869
           G P     P +    P     P P +G   G  P  PP          P  G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 24.2 bits (50), Expect = 2.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 913 PPRXTPPGXPPXXPP 957
           P +  PPG PP  PP
Sbjct: 42  PSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 7.8
 Identities = 12/42 (28%), Positives = 12/42 (28%)
 Frame = +3

Query: 819 GPPPPXXXXKXXXPXXGGGPPPXGXXXXPGXSPPXNPPXXPP 944
           G P P             G PP      P   PP  PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 YIYMSYNNKYTIPINMFRILTIDKLNI 233
           Y Y +YNN Y      + I+ I+++ +
Sbjct: 309 YNYKNYNNNYNSKKLYYNIINIEQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 153 YIYMSYNNKYTIPINMFRILTIDKLNI 233
           Y Y +YNN Y      + I+ I+++ +
Sbjct: 320 YNYKNYNNNYNSKKLYYNIINIEQIPV 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,922
Number of Sequences: 438
Number of extensions: 15465
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 45503877
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)