Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G05
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.15 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.15 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 31/154 (20%), Positives = 36/154 (23%)
 Frame = +2

Query: 722  SAXPPVXLPXXAGGRTPXXPXXGAXXXXXLXXXPPPXPPXXPXGXRRXLXXXXSPXXPPP 901
            S+ PP  +P  +    P  P             PP   P  P      +     P  PPP
Sbjct: 238  SSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR--PIAPVSMNPAINSTSKPPLPPP 295

Query: 902  XXXXXXXXPXXXGGGPXPXXXXXXPXXXXXPXXXXXSXXXXGXGAPPXXXXXXXXPPXXG 1081
                           P P            P     S        PP         P   
Sbjct: 296  SSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355

Query: 1082 GGXGXPPPPXPRXSXXXAGGXXPXXXXPXXPXPP 1183
             G   PPPP PR +        P         PP
Sbjct: 356  QGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPP 389



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +3

Query: 1035 PPXXXXAXPPXPPXXGGGGGXPXPXXPXXHXXPRGXXXPPXXXPXXPXPP 1184
            PP    + PP  P          P  P     P G    P   P  P PP
Sbjct: 428  PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 32/140 (22%), Positives = 33/140 (23%), Gaps = 8/140 (5%)
 Frame = +2

Query: 560 PPPXXXSRPGPGGGXXXLSFXPXXPXPPP--GGXXRXFXSPXLXXXXXXXPXXAXXSAXP 733
           PPP    R    G           P PPP           P L          A   A P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 734 ----PVXLPXXAGGRT--PXXPXXGAXXXXXLXXXPPPXPPXXPXGXRRXLXXXXSPXXP 895
               P   P     RT  P  P   +         PP  PP  P G         S    
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456

Query: 896 PPXXXXXXXXPXXXGGGPXP 955
           PP        P      P P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAP 476


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 34/155 (21%), Positives = 34/155 (21%), Gaps = 2/155 (1%)
 Frame = +1

Query: 733  ARXPPXPXXGXHXXP-PXXRRXXXXGSXXXAXPXPPXXXXRXPAXXXXXXXPXPPPPXXX 909
            AR PP P       P P               P  P      P        P  PPP   
Sbjct: 1009 ARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPA 1068

Query: 910  XXXX-PPXXXWRGAXXPXXXXXXXXXXXPXXXXPXXXXXXXXGPPXXXXPXXXPPXXXGG 1086
                 P      GA              P    P         PP    P   PP     
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA-PSGAPPVPKPS 1127

Query: 1087 XGGPPXPXPPXXTPXRGGXXXXPXXPXXXXXPPXP 1191
               PP P P    P        P  P     PP P
Sbjct: 1128 VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162



 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +1

Query: 1036 PPXXXXPXXXPPXXXGGXGGPPXPXPPXXTPXRGGXXXXPXXPXXXXXPPXP 1191
            PP        PP      G PP P P    P        P  P     PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/54 (29%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1033 GPPXXXXPXXXPPXXXGGXGGPPXPXPPXXTPXRGGXXXXPXXP-XXXXXPPXP 1191
            G P    P   PP      G PP P P    P        P  P      PP P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 1031 GAPPXXXXXXXXPPXXGGGXGXPPPPXP 1114
            GAPP        PP      G PP P P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +1

Query: 1039 PXXXXPXXXPPXXXGGXGGPPXPXPPXXTPXRGGXXXXPXXPXXXXXP 1182
            P    P   PP       GPP P PP      GG       P     P
Sbjct: 756  PIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +3

Query: 360 PXXPPRPVRGXXXPRTXHSSXXTXAXPPPPXP 455
           P  PP P+ G   P            PPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 23.8 bits (49), Expect(2) = 5.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 1114 GXXGXGXPPPPP 1079
            G  G G PPPPP
Sbjct: 769  GVAGAGPPPPPP 780



 Score = 21.4 bits (43), Expect(2) = 5.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 1105 GXGXPPPPPXXGGXGG 1058
            G   PPPPP     GG
Sbjct: 774  GPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,836,482
Number of Sequences: 5004
Number of extensions: 21055
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)