Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G05
         (1286 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    29   0.39 

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
            binding protein protein.
          Length = 838

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 43/184 (23%), Positives = 48/184 (26%), Gaps = 1/184 (0%)
 Frame = +2

Query: 560  PPPXXXSRPGPGGGXXXLSFXPXXPXPP-PGGXXRXFXSPXLXXXXXXXPXXAXXSAXPP 736
            PP     RP PG      +  P  P PP PGG    +  P         P        PP
Sbjct: 186  PPGPQMMRP-PGNVGPPRTGTPTQPQPPRPGGM---YPQPP------GVPMPMRPQM-PP 234

Query: 737  VXLPXXAGGRTPXXPXXGAXXXXXLXXXPPPXPPXXPXGXRRXLXXXXSPXXPPPXXXXX 916
              +P    G  P  P         +   PPP  P  P G  R       P   P      
Sbjct: 235  GAVPGMQPGMQPRPPSAQGMQRPPMMGQPPPIRPPNPMGGPR-------PQISPQNSNLS 287

Query: 917  XXXPXXXGGGPXPXXXXXXPXXXXXPXXXXXSXXXXGXGAPPXXXXXXXXPPXXGGGXGX 1096
               P    G P P            P     +      G P         PP      G 
Sbjct: 288  GGMPSGMVGPPRPPMPMQGGAPGGPPQGMRPNFYNRPMGDP-----QTSRPPSGNDNMGG 342

Query: 1097 PPPP 1108
             PPP
Sbjct: 343  GPPP 346



 Score = 24.2 bits (50), Expect = 8.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 1059 PPXPPXXGGGGGXPXPXXPXXHXXPRG 1139
            PP P   G  GG P    P  +  P G
Sbjct: 300  PPMPMQGGAPGGPPQGMRPNFYNRPMG 326


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,001
Number of Sequences: 2352
Number of extensions: 7411
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 147966414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)