Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G04
(1247 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 33 0.62
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 33 0.62
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 1.1
12_02_1174 - 26696869-26698191 31 1.4
03_01_0515 - 3864796-3865425 31 1.9
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 31 2.5
07_01_0080 + 587674-588510 31 2.5
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 30 4.4
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 4.4
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818... 30 4.4
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 29 5.8
08_02_0937 + 22801526-22802461 27 9.0
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 32.7 bits (71), Expect = 0.62
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
PPPP +PP P S PP PPP P
Sbjct: 95 PPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPP 128
Score = 32.3 bits (70), Expect = 0.82
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
PPPP PP P S PP PPP P
Sbjct: 83 PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSP 116
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -3
Query: 438 GXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
G + PPPP PP P + + PP PPP
Sbjct: 73 GPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPP 113
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.7 bits (71), Expect = 0.62
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = -3
Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
P G G + PPPP PP P + P PPP P
Sbjct: 309 PPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPP 355
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/36 (44%), Positives = 16/36 (44%)
Frame = -3
Query: 417 SXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
S PPPP PPLP S PP PPP P
Sbjct: 562 SPPPPPPPPP--PPPLPQSNYASSQPPPPPPPPPLP 595
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
PPPP KPP+ PP+PPP P
Sbjct: 161 PPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPP 194
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -3
Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
PPPP KPP+ PP+PPP P
Sbjct: 192 PPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPP 225
>03_01_0515 - 3864796-3865425
Length = 209
Score = 31.1 bits (67), Expect = 1.9
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 417 SXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
S PPPP + PP P S PP PPP P
Sbjct: 59 SSPPPPAAGPLMPPPPPPPSVTS-SPPPPPLPPPPP 93
Score = 29.9 bits (64), Expect = 4.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
PPPP PP P PP PPP P
Sbjct: 73 PPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSP 106
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +2
Query: 311 GXGGGVGGXXXXXEXXQXXGRGGLXIXXXXGGGG 412
G GGG GG E GRGG GGGG
Sbjct: 163 GGGGGGGGYHGDGEAGYGRGRGGRDYDGGRGGGG 196
>07_01_0080 + 587674-588510
Length = 278
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
P GG R PPPP PP P PP PPP P
Sbjct: 80 PRLGGDGMFRRPPPPPPPPPSSGSPPPP-----PPPPPPPPPPPPPP 121
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 29.9 bits (64), Expect = 4.4
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = -3
Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
PPPP PP+P + P PPP P
Sbjct: 264 PPPPPPPPPPPPPMPPRTDNASTQAAPAPPPPLP 297
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 29.9 bits (64), Expect = 4.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 417 SXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
S PPPP PP P PP PPP
Sbjct: 36 SAPPPPARHRAPSPPRPPPPPPPPTQPAPPPPPP 69
>03_05_0524 -
25181432-25181483,25181565-25181691,25181776-25181826,
25182159-25182314,25182405-25182905,25182999-25183713,
25183797-25183867,25183974-25184103,25185706-25186167
Length = 754
Score = 29.9 bits (64), Expect = 4.4
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -3
Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
P GG S PPP + PPLP PPP P
Sbjct: 336 PAGGCEEVPALSPSPPPLHGSVMPPPLPPATVEPVISAPMVEPPPPP 382
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = -3
Query: 444 GGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
GG PPPP + PP + PP+PPP P
Sbjct: 954 GGSAQQSEKRPPPPPPPPNVAPPP----FTRQDIPPPPPSPPPLP 994
>08_02_0937 + 22801526-22802461
Length = 311
Score = 26.6 bits (56), Expect(2) = 9.0
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = -3
Query: 417 SXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
S PPPP PL + PP PPP
Sbjct: 5 SPPPPPAPADAEAVPLFYCYECESTVSLPPPPPP 38
Score = 20.6 bits (41), Expect(2) = 9.0
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 219 PPPXGGPXSXLXCPK 175
PPP P L CP+
Sbjct: 33 PPPPPPPSRPLFCPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,301,133
Number of Sequences: 37544
Number of extensions: 363359
Number of successful extensions: 1274
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3852724812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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