Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G04
         (1247 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen...    32   0.97 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.2  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   6.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   9.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   9.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   9.1  

>L15419-1|AAA17726.1|  308|Caenorhabditis elegans col-40 collagen
           protein.
          Length = 308

 Score = 31.9 bits (69), Expect = 0.97
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +2

Query: 713 PGGXXPPGXLNPXGXPXEXXXXTPXVSHXGVXKTXPPXXXG 835
           PGG  PPG   P G P E    TP  S  GV +  PP   G
Sbjct: 170 PGGPGPPGPPGPEGAPGE-DGNTP--SRGGVGEAGPPGPPG 207


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -3

Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
           P  GG        PPPP       PP P           PP PPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -3

Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
           P  GG        PPPP       PP P           PP PPP
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = -3

Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
           P  GG        PPPP       PP P           PP PPP
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -3

Query: 411 PPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPPXP 310
           PPPP       PPLP     S     PP PPP P
Sbjct: 496 PPPP-------PPLPPIATPSSVPPPPPPPPPPP 522


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -3

Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
           P  G     R   PPPP       PP             PP PPP
Sbjct: 259 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 303


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -3

Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
           P  G     R   PPPP       PP             PP PPP
Sbjct: 280 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 324


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -3

Query: 450 PXGGGXXXXRXSXPPPPXXXXIXKPPLPXXWXXSXXXXXPPTPPP 316
           P  G     R   PPPP       PP             PP PPP
Sbjct: 265 PAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPP 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,693
Number of Sequences: 27780
Number of extensions: 220906
Number of successful extensions: 809
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)