Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G03
         (1228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    41   4e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.00 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.3  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    26   9.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 27/69 (39%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = -3

Query: 869 GGFXXGPPFP*GXXGGXGXXXGXGX--GXXTPXGGLPGGXXAXXGPXGFXXXGLGGNFXX 696
           GG   GPP   G  GG G   G G   G     GG PGG     G  G    G GG    
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL-- 251

Query: 695 XXWGGGPXG 669
             +GGGP G
Sbjct: 252 GGFGGGPGG 260



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 23/74 (31%), Positives = 23/74 (31%)
 Frame = -3

Query: 980 GXXXXGXXXXGGVFXGGXEXXPRXXXXXGXPXLGTXXGGFXXGPPFP*GXXGGXGXXXGX 801
           G    G     G F G            G    G   GGF  GP    G  GG G   G 
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253

Query: 800 GXGXXTPXGGLPGG 759
             G     GG PGG
Sbjct: 254 FGGGPGGFGGGPGG 267



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = -3

Query: 869 GGFXXGPPFP*GXXGGXGXXXGXGXGXXTPXGGLPGGXXAXXGPXG 732
           GGF  GP    G  GG G   G   G     GG PGG     G  G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269



 Score = 29.9 bits (64), Expect = 0.75
 Identities = 20/54 (37%), Positives = 20/54 (37%)
 Frame = -3

Query: 869 GGFXXGPPFP*GXXGGXGXXXGXGXGXXTPXGGLPGGXXAXXGPXGFXXXGLGG 708
           GGF  G     G  GG G   G   G     GG PGG     G  G    G GG
Sbjct: 211 GGFG-GEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGG 263



 Score = 29.9 bits (64), Expect = 0.75
 Identities = 20/57 (35%), Positives = 21/57 (36%)
 Frame = -3

Query: 827 GGXGXXXGXGXGXXTPXGGLPGGXXAXXGPXGFXXXGLGGNFXXXXWGGGPXGXXPP 657
           GG G   G   G     GG  GG     G  G    G GG      +GGGP G   P
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGG------FGGGPGGHGGP 271



 Score = 29.5 bits (63), Expect = 1.00
 Identities = 32/94 (34%), Positives = 34/94 (36%)
 Frame = -3

Query: 950 GGVFXGGXEXXPRXXXXXGXPXLGTXXGGFXXGPPFP*GXXGGXGXXXGXGXGXXTPXGG 771
           GG+  GG                G   GGF  G   P    GG G   G G G     GG
Sbjct: 164 GGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFG-GEGHHHGG 222

Query: 770 LPGGXXAXXGPXGFXXXGLGGNFXXXXWGGGPXG 669
             GG     GP GF   G GG      +GGGP G
Sbjct: 223 -HGGFGG--GPGGFEG-GPGG------FGGGPGG 246



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = -3

Query: 836 GXXGGXGXXXGXGXGXXTPXGGLPGGXXAXXGPXGFXXXGLGGN 705
           G  GG G   G   G     GG  GG     G  G    G GG+
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH 268


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 22/75 (29%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
 Frame = +2

Query: 752  PXFPXATPPXGXXSPXPPXXGXPXPPXXLKERGXXXKTPXXXFPXPXXPXXXKXGXXFPX 931
            P  P +TPP    S  PP    P PP            P    P P  P         P 
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPP----------PPPMSVPPPPSAPPMPAGPPSAPP 1732

Query: 932  P--PXKPPPXXPXPG 970
            P  P    P  P PG
Sbjct: 1733 PPLPASSAPSVPNPG 1747


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 29/130 (22%), Positives = 29/130 (22%), Gaps = 8/130 (6%)
 Frame = +2

Query: 677  APPPRXPXXNSPPXXGXXNRXXXXKPXF---PXATPPXGXXSPXPPXXGXPXP-----PX 832
            APP   P    PP           KP     P   P      P P     P P     P 
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160

Query: 833  XLKERGXXXKTPXXXFPXPXXPXXXKXGXXFPXPPXKPPPXXPXPGXXXXXXXXXXXXXQ 1012
              K        P      P  P         P P   PP   P  G              
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220

Query: 1013 XXGXGAPPPP 1042
                G PP P
Sbjct: 1221 TPSAGLPPVP 1230


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 18/62 (29%), Positives = 20/62 (32%)
 Frame = +2

Query: 641 PKXGXXGGXXXXAPPPRXPXXNSPPXXGXXNRXXXXKPXFPXATPPXGXXSPXPPXXGXP 820
           PK    G     A PP  P   +PP      R     P  P   PP    +P  P    P
Sbjct: 110 PKLRHIGKSSASAAPPSAP---APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166

Query: 821 XP 826
            P
Sbjct: 167 IP 168


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 24/101 (23%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
 Frame = +2

Query: 767  ATPPXGXXSPXPPXXGXPXPPXXLKERGXXXKTPXXXFPX-----PXXPXXX--KXGXXF 925
            AT      +P PP    P PP  ++++      P   +       P  P     K     
Sbjct: 180  ATSLPSDYNPPPP----PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPL 235

Query: 926  PXPPXKPPPXXPXPGXXXXXXXXXXXXXQXXG--XGAPPPP 1042
            P PP  PPP  P                   G     PPPP
Sbjct: 236  PAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 969 PGXGXXGGGFXGGXGKXXPXXFXXGXXGF 883
           PG G  GGGF GG           G  GF
Sbjct: 442 PGGGFPGGGFPGGSYNSQGFGMGGGFPGF 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.151    0.526 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,336
Number of Sequences: 5004
Number of extensions: 31758
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)