Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_G02
(1181 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 322 4e-89
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.3
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 28 2.2
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 28 2.9
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 2.9
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 6.7
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 6.7
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 322 bits (792), Expect = 4e-89
Identities = 153/259 (59%), Positives = 192/259 (74%), Gaps = 1/259 (0%)
Frame = +3
Query: 90 MPQNESXERHQKLYGXRLXYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 269
MPQNE E + +G R + RGIKAK++ ++RR EKIQ
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60
Query: 270 MKKKIKAHEEKNV-KHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 446
MKK IK HEE+N + ++ +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61 MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120
Query: 447 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 626
+P+VR A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180
Query: 627 AHVTHPELKATFCLPIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVVWGK 806
A+VTH EL T LPIIGVKKNP S YT LGV+TKGTVIEVN+SELGLVT GKVVWGK
Sbjct: 181 ANVTHKELGVTMQLPIIGVKKNPQSPTYTQLGVLTKGTVIEVNVSELGLVTSGGKVVWGK 240
Query: 807 YAQVTNNPENDGCINAVLL 863
YAQ+TNNPE DGC+NA+LL
Sbjct: 241 YAQITNNPELDGCVNALLL 259
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 1.3
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 335 FGDLLCVMFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 162
F LL F +L F+ F F F F++ I YF SF F LF F+ + F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170
Query: 161 FSL 153
FSL
Sbjct: 171 FSL 173
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 603 PMALRFKKAHVTHPELKATFCLPIIGVKKNPSSQMYTSLGV 725
PM F + HP K FC+P + ++ P LGV
Sbjct: 287 PMKEEFSQYIKKHPLHKVRFCMPWLSIEDYPQVMACADLGV 327
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.9 bits (59), Expect = 2.9
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = +3
Query: 246 ERRNEKIQMKKKIKAHEEKNVKHNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 425
E+ + K+++ ++ +K ++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 426 AGKWDVPIPKVRAQADAEVFKVLK 497
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +3
Query: 636 THPELKATFCL-PIIGVKKNPSSQMYTSLGVITKGTVIEVNISELGLVTQAGKVV-WGKY 809
T P ++A FC+ P + + PS + +L + + ++ E+N +VTQ+ K
Sbjct: 137 TSPGIRAGFCIFPSLNI---PSGE---NLQIKSSSSLEEINKIPENIVTQSLSYTNLLKK 190
Query: 810 AQVTNNPENDGCINAVLL 863
+ + NP N+GC ++ L
Sbjct: 191 FETSPNPSNNGCFRSLAL 208
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +3
Query: 462 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 599
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 296 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 174
FV D FL+ LF LI +F+ F LFS F S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,664,153
Number of Sequences: 5004
Number of extensions: 70739
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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