Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_G01
         (1151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    32   0.13 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    32   0.17 
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    30   0.70 
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    28   2.1  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   8.6  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
 Frame = +3

Query: 216  VCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLE-GVCDRIL 392
            V K+  ++LQN ++   K  E+I     L  ++ KK  +  +S  R+I  L+ G+ ++ +
Sbjct: 1156 VMKLGLSDLQNHVKRISKEMEIISCQRQLLFLENKKLKRTVESSNRVIADLQRGITEKDV 1215

Query: 393  EYNIHK--ERSDSTRFAKGMSQTFKTLHGLVDKGVKV--DLGIPLELWDKPSAEITHMKT 560
                    ERS+       ++++ K+L   +++  +V  +L   +E      A     K 
Sbjct: 1216 SSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLANFRLNKE 1275

Query: 561  QCESLLEENEIAVE 602
            Q ES L+  + AV+
Sbjct: 1276 QLESQLQTEKAAVK 1289


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 159 DNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQ 338
           + +I S++ +   +  +CE C +   ELQN   E  K+ E  +  +       K+     
Sbjct: 288 EKEISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASL 347

Query: 339 KSELRLIE 362
           KS++  +E
Sbjct: 348 KSQINFLE 355


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +3

Query: 210 CEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDRI 389
           C + K      Q+ +E+ G + EVI    S+  ++ K KT  +K ELR   +L  V DR+
Sbjct: 79  CLIVKDSQQTYQDLVEQQG-LDEVITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRV 137

Query: 390 LEY 398
           L+Y
Sbjct: 138 LKY 140


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = -3

Query: 636 DLLYLDGSNTSLRRLFRSLLKGFHIVFSYE*FQQKVYPTAPMVFRDPLLHLYLRDREGS* 457
           DL+   G N  ++ L RSL +G           + +     +V R+P + L ++D+E S 
Sbjct: 174 DLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFI-LAVKDKEASG 232

Query: 456 MFDSFLWQILYYRTFLCEYCIL 391
               ++ +      FL  Y +L
Sbjct: 233 KLTQYVVKCSEQDKFLLAYILL 254


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 231 ATELQNRLEETGKVHEVIEIGYSLDDVQPKK-KTKYQKSELRLIESLEGVCD 383
           AT LQN+  + G V    E   S  D+Q K+ K+  + + L  I S  G+ D
Sbjct: 364 ATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSIEENNSLPPIVSTNGITD 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,638,859
Number of Sequences: 5004
Number of extensions: 69758
Number of successful extensions: 203
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 615584238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)