Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F24
         (1163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    30   0.53 
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    29   1.6  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   3.8  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   6.6  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    26   8.7  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   8.7  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   8.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   8.7  

>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 217 EMLLHPELLSNEQLTHIIEQRHLRI--DGIEKM-LRDDLLDLFHQYCVPYGQ 363
           E  L P + S   L  IIE  H++   D I+ + ++D+L+D FH  CV   Q
Sbjct: 71  EAALRPAVGSVHDLVRIIETDHVQAARDFIQDVGIQDELIDAFHADCVELEQ 122


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 526 KLENVTTKCSHMNSNNHKRKIINDPNS 606
           K ++    C H NSN+H+ KI+ D  S
Sbjct: 109 KADSTNGFCEHNNSNDHQLKILQDKGS 135


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 776 HNIL*CIRNYAISLFSVYLMMMKFIHIIYYFKFNFI 883
           HN++  I +Y +SLF ++L      +   Y  FNFI
Sbjct: 341 HNLINTIIDYGMSLFHLFLFAAFIRNNSLYTSFNFI 376


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +2

Query: 113 ILCVGALKLQIISVSMLHVIKSSSLTSEKQWLFLTK 220
           +  + +  LQII ++ L ++KS +L  ++ + F+++
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 217 EMLLHPELLSNEQLTHIIEQRHLRIDGIEKMLRDDLLDLFHQYCVPYGQRK 369
           E +L+  LLS  +L  II     R    ++   D L++  ++YC    Q++
Sbjct: 5   EQILNDYLLSQGRLQSIISLEQWRQLFPQRYREDPLIERLYEYCTQQRQKR 55


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 358 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 468
           G   +++ G GK+  R  H+SP  E ++SL   +  E++HT
Sbjct: 88  GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 842 KFIHIIYYFKFNFIRLVFYFPVMLIRKSQ 928
           K  +++Y  +  FIR  +YF +++ R++Q
Sbjct: 120 KICNVVYVCERKFIRKEYYFAILMDRENQ 148


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 648  PCYYFSFFFCLNRLRVRIIDDF 583
            P  YF +FF  NR+ + ++D F
Sbjct: 1797 PKGYFGYFFKTNRVEMEVLDSF 1818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,549
Number of Sequences: 5004
Number of extensions: 79269
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)