Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F23
         (1223 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 1118 GGGGGGGGXXXXPPXPP 1068
            GGGGG G     PP  P
Sbjct: 524  GGGGGSGSGNNQPPGGP 540


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 1032 PPPPPPP 1012
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 1031 PPPPPPP 1011
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 1027 PPPPPPP 1007
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 1098 PPPPPPP 1118
            PPPPPPP
Sbjct: 731  PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 1099 PPPPPPP 1119
            PPPPPPP
Sbjct: 731  PPPPPPP 737


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
            neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 1033 TPPPPPPPP 1007
            TPP P PPP
Sbjct: 97   TPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.154    0.524 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,659
Number of Sequences: 336
Number of extensions: 5282
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35760828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)