Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F23
(1223 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.020
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.19
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 30 0.75
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.99
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 7.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 7.0
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.7 bits (81), Expect = 0.007
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 1055 PPPPXGGXGGXXXXPPPPPPP 1117
PPPP G G PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.14
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 1082 PPXPPXGGGGXFFXXXXPPPPPPPP 1008
PP PP G G PPPPPPPP
Sbjct: 763 PPPPPPGVAGA-----GPPPPPPPP 782
Score = 30.3 bits (65), Expect = 0.57
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 1083 PPXPPXGGGGXFFFXXXPPPPPPP 1012
PP PP G G PPPPPPP
Sbjct: 763 PPPPPPGVAGA---GPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.75
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 1057 PPPXGGXGGXXXXPPPPPPPP 1119
PPP GG PPPPPPPP
Sbjct: 752 PPPAPIMGG----PPPPPPPP 768
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 1101 GGXXXXPPXPPXGGGGXFFFXXXPPPPPP 1015
GG PP P G G PPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGP----PPPPPPPP 783
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 1083 PPXPPXGGGGXFFFXXXPPPPPPPP 1009
PP P GG PPPPPPPP
Sbjct: 752 PPPAPIMGG--------PPPPPPPP 768
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 1082 PPXPPXGGGGXFFXXXXPPPPPPPP 1008
PP P GG PPPPPPPP
Sbjct: 752 PPPAPIMGG--------PPPPPPPP 768
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1030 PPPPPPPP 1007
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +2
Query: 767 PPXKXKXPPPPPPXXFXXXXGGGGGPPP 850
PP PPPPP G G PPP
Sbjct: 753 PPAPIMGGPPPPPP--PPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/35 (31%), Positives = 13/35 (37%)
Frame = -3
Query: 1116 GGGGGGGXXXXPPXPPXGGGGXFFFXXXPPPPPPP 1012
G G G PP P GG ++ P P P
Sbjct: 769 GVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.1 bits (77), Expect = 0.020
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -1
Query: 1082 PPXPPXGGGGXFFXXXXPPPPPPPPXXXKKKK 987
PP PP G F PPPPPPP KK+K
Sbjct: 11 PPPPPPG-----FEPPSQPPPPPPPGYVKKRK 37
Score = 31.9 bits (69), Expect = 0.19
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 1054 PPPPXGGXGGXXXXPPPPPPPP 1119
PPPP G PPPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 1083 PPXPPXGGGGXFFFXXXPPPPPPPPXXXXKKK 988
PP PP G F PPPPPPP K+K
Sbjct: 11 PPPPPPG-----FEPPSQPPPPPPPGYVKKRK 37
Score = 29.5 bits (63), Expect = 0.99
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 528 PPXXNPXPPPPXGFXXXPPPXGXKXKXXXXKKKKK 632
PP P PPPP GF P K+K K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +3
Query: 519 NPPPPXXNPXPPPPXGFXXXPPPXGXKXK 605
NPPPP P PP PPP K +
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1031 PPPPPPPP 1008
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect(2) = 0.11
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -2
Query: 1033 TPPPPPPPP 1007
+PPPPPPPP
Sbjct: 369 SPPPPPPPP 377
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1096 PPPPPPPP 1119
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 24.2 bits (50), Expect(2) = 0.11
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -2
Query: 1030 PPPPPPPPXXXKKKKXXXXG 971
PPPPPPP K G
Sbjct: 371 PPPPPPPELLNHSPKSRPLG 390
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Frame = +1
Query: 1018 GGGGGXXXKKKXPPPPXGGXGGXXXXPP-----PPPPPP 1119
G G PPPP G PP PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/91 (24%), Positives = 27/91 (29%)
Frame = +2
Query: 578 PPPPRXKXKXXXXKKKKKXXRAXPXXKKKGGXGXXXPXXXGGKKXXXPPPKKKXXXKXV* 757
PPP KK+ P ++ G PPP + +
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI- 351
Query: 758 KKKPPXKXKXPPPPPPXXFXXXXGGGGGPPP 850
PP PPPPPP G PPP
Sbjct: 352 -PLPPQGRSAPPPPPP---RSAPSTGRQPPP 378
Score = 29.9 bits (64), Expect = 0.75
Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Frame = +1
Query: 1042 KKKXPPPPXG----------GXGGXXXXPPPPPPPPXKXXXXXXXXXXXGXXXXPP 1179
KK+ PPPP G G PPPPPPP G PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 29.9 bits (64), Expect = 0.75
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 1030 PPPPPPPPXXXKKK 989
PPPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 29.1 bits (62), Expect = 1.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 1032 PPPPPPPPXXXXKK 991
PPPPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1096 PPPPPPPP 1119
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 1027 PPPPPPPXXXKKKK 986
PPPPPPP +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.99
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 1048 KXPPPPXGGXGGXXXXPPPPPPPP 1119
K P G PPPPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1031 PPPPPPPP 1008
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1030 PPPPPPPP 1007
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 1042 KKKXPPPPXGGXGGXXXXPPPPPP 1113
K + P GG PPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 1046 KKXPPPPXGGXGGXXXXPPPPPPP 1117
K P G PPPPPPP
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 1015 GGGGGGXXXKKKXPPPPXGGXGG 1083
GGG GG PPP GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG 209
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 1118 GGGGGGGGXXXXPPXPPXGGGG 1053
GG GG GG PP P G GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGG 209
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -2
Query: 649 GGGPXXFFFFFXXXXFXFXPXGGGXXKXPXGGGGXGFXXGGGGFXXXG 506
GGGP F F P G G GGG GF G GG G
Sbjct: 227 GGGPGGFEG--GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 604 FXFXPXGGGXXKXPXGGGGXGFXXGGGGFXXXGG 503
F P G G GGG GF G GGF G
Sbjct: 233 FEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/53 (24%), Positives = 16/53 (30%)
Frame = +2
Query: 647 PXXKKKGGXGXXXPXXXGGKKXXXPPPKKKXXXKXV*KKKPPXKXKXPPPPPP 805
P ++ G P PPP + P PPPPPP
Sbjct: 143 PASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPPPP 195
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1031 PPPPPPPP 1008
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1096 PPPPPPPP 1119
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1031 PPPPPPPP 1008
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1096 PPPPPPPP 1119
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +3
Query: 522 PPPPXXNPXPPPPXGFXXXPPP 587
PPP P P P G PPP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPP 1213
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1030 PPPPPPPP 1007
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1096 PPPPPPPP 1119
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -3
Query: 1032 PPPPPPPP 1009
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 1030 PPPPPPPP 1007
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 1096 PPPPPPPP 1119
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 549 PPPPXGFXXXPPPXGXK 599
PPPP GF PP G +
Sbjct: 129 PPPPAGFGRGAPPPGFR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.154 0.524
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,439
Number of Sequences: 5004
Number of extensions: 53320
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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