Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F22
         (1179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.07 |||substrate-specific nuclear cofactor for exosome a...    33   0.077
SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   2.2  

>SPCC1739.07 |||substrate-specific nuclear cofactor for exosome
           activity |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 133

 Score = 33.1 bits (72), Expect = 0.077
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 307 QIELXLFFVYTLNSLHWIHLRTKGIDPTKHPIKDELLRIKATMLKWQEVKDRQKRPTVNV 486
           Q +L +   Y +NS  +   +  GID ++ P+  EL R+K  + K Q+ +      T  V
Sbjct: 44  QAKLYITMSYAINSTLYSFYKLNGIDASERPVMQELQRVKNYISKIQQAEKNVNPKTEAV 103

Query: 487 EVAKRLV 507
             +   +
Sbjct: 104 NTSNAAI 110


>SPAC22E12.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -2

Query: 470 LFWRSFTSCHFNIVAFILSSSSLMGCFVGSMPFVRKCIQCSEFKVYTKNK 321
           +F+RS    HF   AF+++ ++ +  F+   PF +    C  +K+ T+++
Sbjct: 25  MFYRSSRILHFE-EAFVINETNNINQFIPKQPFFKLLDCCILYKLQTEDR 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,723,036
Number of Sequences: 5004
Number of extensions: 67435
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)