Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F21
(1190 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 205 8e-54
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 205 8e-54
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 30 0.55
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 28 2.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.9
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 5.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 6.8
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 9.0
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 205 bits (501), Expect = 8e-54
Identities = 118/272 (43%), Positives = 161/272 (59%), Gaps = 10/272 (3%)
Frame = +1
Query: 238 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 411
K EVDYS E L KS I +++LL EKQ R +D + +++L+ +
Sbjct: 4 KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60
Query: 412 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 591
+ F A ++ LN+ +V L K+ QLKQ++ +VQ TY+ D +TKI LIETLRTIT
Sbjct: 61 LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120
Query: 592 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRL 771
+GKIYVEVERARLT +L++I+EE+G++ A +I+ VETYGS D +EKV IL+Q+RL
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRL 180
Query: 772 CLAIKDYVRTQIISKKINTKFFEDENTQELKEKFYRLMIAVDQHNGQYLSVCRHXRAL-G 948
L DY +KKIN KFFE E+ Q LK K+Y I + H+ YL VC++ RA+
Sbjct: 181 FLLRSDYYMASTYTKKINVKFFEKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYD 240
Query: 949 TA-------GGPEALXGXVVXLIXAPYDNXQA 1023
TA E L V + PYDN QA
Sbjct: 241 TAVVQEDPEKWKEILENVVCFALLTPYDNEQA 272
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 205 bits (501), Expect = 8e-54
Identities = 118/272 (43%), Positives = 161/272 (59%), Gaps = 10/272 (3%)
Frame = +1
Query: 238 KMEVDYSATCDEKLPLWKSWAAQGKIQ--EAIDQLLALEKQTRTGADMVSTSRILVTVVQ 411
K EVDYS E L KS I +++LL EKQ R +D + +++L+ +
Sbjct: 4 KPEVDYSEKFAE---LQKSLNNLNTIDIDANLEKLLIFEKQVRQASDTSTNTKVLIYIAD 60
Query: 412 IYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTIT 591
+ F A ++ LN+ +V L K+ QLKQ++ +VQ TY+ D +TKI LIETLRTIT
Sbjct: 61 LLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTIT 120
Query: 592 EGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRL 771
+GKIYVEVERARLT +L++I+EE+G++ A +I+ VETYGS D +EKV IL+Q+RL
Sbjct: 121 DGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRL 180
Query: 772 CLAIKDYVRTQIISKKINTKFFEDENTQELKEKFYRLMIAVDQHNGQYLSVCRHXRAL-G 948
L DY +KKIN KFFE E+ Q LK K+Y I + H+ YL VC++ RA+
Sbjct: 181 FLLRSDYYMASTYTKKINVKFFEKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYD 240
Query: 949 TA-------GGPEALXGXVVXLIXAPYDNXQA 1023
TA E L V + PYDN QA
Sbjct: 241 TAVVQEDPEKWKEILENVVCFALLTPYDNEQA 272
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 30.3 bits (65), Expect = 0.55
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Frame = +1
Query: 688 IIQELQVETYGSMDKREKVELILEQMRLCL--AIKDYVRTQIISKKINTKFF-----EDE 846
+I+EL + +Y ++ ++ ++ + + + L A KD ++ +++SK FF EDE
Sbjct: 696 LIKEL-ITSYFNLTRKIIIDQVPKVIMHLLVNASKDAIQNRLVSKLYREDFFDTLLIEDE 754
Query: 847 NTQELKEKFYRLMIAVDQHN 906
N + +EK RL+ +Q N
Sbjct: 755 NVKSEREKCERLLSVYNQAN 774
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Frame = +1
Query: 235 IKMEVDYSATCDEKLPLWK----SWAAQGKIQEAIDQLLALEKQTRTGADMV-STSRILV 399
+ M + + +KLPLWK ++ +G + L + G D+ IL
Sbjct: 114 VSMAICRAGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILP 173
Query: 400 TVVQIYFEAKNWSALNDH-IVVLSKRR 477
T + EA W A H + ++K+R
Sbjct: 174 TGAPSFSEAMRWGAETYHTLKSIAKKR 200
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 3.9
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 11/109 (10%)
Frame = +1
Query: 472 RRSQLKQAVVKMVQECYTYVDKTPDKETKI-----KLIETLRTITEGK-IYVEVE--RAR 627
+RS K+ V+ C++ +D P K ++ L +T + ++E K I+ E+E R
Sbjct: 678 QRSLDKEEEKLFVEHCHSMIDVIPSKSAEVYSHLETLTKTFKNLSEAKPIFDEIELLDKR 737
Query: 628 LTHILAKIREEEGNVAEAAKIIQELQVE---TYGSMDKREKVELILEQM 765
L+ ++ + +G++ E+Q E Y EK++L+++ +
Sbjct: 738 LSETKTELSDLQGDLQGLDIRKDEIQSELDTLYLRRANLEKLQLLVKDI 786
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 5.1
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +1
Query: 787 DYVRTQIISKKINTKFFEDENTQELKE--KFYR-LMIAVDQHNGQ-YL--SVCRHXRA 942
D+ + I KK N +FF+ +NT + E K YR MI+ + N + YL + CR A
Sbjct: 62 DFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTACRRNLA 119
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.6 bits (56), Expect = 6.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 214 LDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKI-QEAIDQL 336
LDA K I E +S E+L ++ W +QG I ++ DQL
Sbjct: 450 LDAESKGIAYEYKHSTFFSEQLTAFEVWLSQGLISRKPPDQL 491
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 922 LTDIVHYAGPQLSSVGKTSLSAPEYFRLQKTLY*FSLI*SVYG 794
++D+ P + +V TS P YFR+ K F I YG
Sbjct: 344 ISDLTDSQAPTILNVVHTSEQPPTYFRVNKFTEGFQSIIDSYG 386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,988,642
Number of Sequences: 5004
Number of extensions: 77594
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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