Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F21
         (1190 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          25   4.3  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    25   4.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   7.6  

>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 840 RRKYSGAEREVLPTDDSCG 896
           RRK +   R++LP D  CG
Sbjct: 1   RRKRNSGARQILPEDSLCG 19


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
            protein.
          Length = 338

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 1049 YXHYXXXEIAXSLSYGAXIRXTTLPISASGPPAVPKA 939
            Y  Y       SL+ G+ +       SAS PP +P A
Sbjct: 138  YAPYLAVRPVESLTSGSNVAAAAAGASASTPPTIPSA 174


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
 Frame = +1

Query: 538 TPDKETKIKLIETLRTITEGKIYVEV-----ERARLTHILAKIREEEGNVAEAAKIIQEL 702
           T +K T+   + TL  +     +  +     E  RL     KIR + G +  + K +QE 
Sbjct: 589 TGEKSTRSDALRTLNLLNRSTDHALLAQKRQEHQRLVRECDKIRNQRGQIENSIKELQER 648

Query: 703 QVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKFFEDENTQELKEKFYR 879
             E      KR+  E + +  +  + +K   R +   K++  +     N  E K KF R
Sbjct: 649 CAEL--REQKRDLQEQLSKYQQTKMKVK---RQEQKCKELTARLV---NVDEEKVKFER 699


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,938
Number of Sequences: 2352
Number of extensions: 19152
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 134886510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)