Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F21
(1190 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-6|AAA81126.1| 490|Caenorhabditis elegans Proteasome regu... 235 6e-62
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 29 4.9
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 29 6.5
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 29 6.5
AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode poly... 29 6.5
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 29 6.5
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 29 6.5
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 29 6.5
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 29 8.5
Z48241-1|CAA88285.1| 346|Caenorhabditis elegans Hypothetical pr... 29 8.5
>U40029-6|AAA81126.1| 490|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 5 protein.
Length = 490
Score = 235 bits (574), Expect = 6e-62
Identities = 128/276 (46%), Positives = 172/276 (62%), Gaps = 11/276 (3%)
Frame = +1
Query: 226 GKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTV 405
G++ KME DYS DE L L AQ A++ L +EK TR GADM S +R++ +
Sbjct: 34 GRLFKMEQDYSKQVDEAL-LKARDIAQKDAVAAVESLNNIEKLTRLGADMKSNTRVVQYM 92
Query: 406 VQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRT 585
++ FE + W L + I+ LSK+R +K A+ KMV++ +DK P ++ K+KLIETLRT
Sbjct: 93 TKLCFEGQKWDLLMETIMTLSKKRLLIKMAIAKMVRDAVAMIDKMPTEDLKMKLIETLRT 152
Query: 586 ITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQM 765
+T GKIYVEVERARLT ++ K E EG + EAA ++ ELQVETYGSM+ REKV+ +LEQM
Sbjct: 153 VTAGKIYVEVERARLTSMVVKKLEREGKLDEAATMLLELQVETYGSMEMREKVQYLLEQM 212
Query: 766 RLCLAIKDYVRTQIISKKINTKFF---EDENTQELKEKFYRLMIAVDQHNGQYLSVCRHX 936
R L D+VR IISKKIN KFF +++ Q LK K+Y MI + H+G YL VCRH
Sbjct: 213 RYSLVRNDFVRATIISKKINIKFFNKSDEDEVQNLKLKYYDSMIRIGLHDGNYLDVCRHH 272
Query: 937 RAL--------GTAGGPEALXGXVVXLIXAPYDNXQ 1020
R + +A L +V + AP+ N Q
Sbjct: 273 REIYETKKIKADSAKATSHLRSAIVYCLLAPHTNEQ 308
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 29.5 bits (63), Expect = 4.9
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Frame = +1
Query: 559 IKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKRE 738
+K + ++++ E + + + + HIL I E+ EAA++++ +Q + S E
Sbjct: 381 VKADKKIQSLMEHALAIAGTKNTIQHILVHIENEDIVPLEAAQLLKSIQETPFPSQTIAE 440
Query: 739 KVELILE----------QMRLCLAIKDYVRTQIISKKINTKFFEDENTQELKEKFYRLMI 888
+ E + LA VR + K I ED+ +ELKEKF R+ +
Sbjct: 441 ALIKFAESRVSKNNQVVRQSAWLAAGSVVRGIVDYKNIRPLVREDK--RELKEKFLRVFM 498
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 29.1 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 655 EEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKF 834
+ EG +E K I + ET G D +EK E L++ ++K + ++ K K
Sbjct: 324 KSEGKKSEVMKAILKFYDETTG--DAKEKAEGKLKEACKEYSVKAFGEEKVAQFKAQYKK 381
Query: 835 FEDENTQE 858
+DEN ++
Sbjct: 382 LKDENAEQ 389
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 29.1 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 655 EEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKF 834
+ EG +E K I + ET G D +EK E L++ ++K + ++ K K
Sbjct: 1320 KSEGKKSEVMKAILKFYDETTG--DAKEKAEGKLKEACKEYSVKAFGEEKVAQFKAQYKK 1377
Query: 835 FEDENTQE 858
+DEN ++
Sbjct: 1378 LKDENAEQ 1385
>AF106581-3|AAO25985.1| 399|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform b
protein.
Length = 399
Score = 29.1 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 655 EEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKF 834
+ EG +E K I + ET G D +EK E L++ ++K + ++ K K
Sbjct: 279 KSEGKKSEVMKAILKFYDETTG--DAKEKAEGKLKEACKEYSVKAFGEEKVAQFKAQYKK 336
Query: 835 FEDENTQE 858
+DEN ++
Sbjct: 337 LKDENAEQ 344
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 29.1 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 655 EEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKF 834
+ EG +E K I + ET G D +EK E L++ ++K + ++ K K
Sbjct: 1078 KSEGKKSEVMKAILKFYDETTG--DAKEKAEGKLKEACKEYSVKAFGEEKVAQFKAQYKK 1135
Query: 835 FEDENTQE 858
+DEN ++
Sbjct: 1136 LKDENAEQ 1143
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 29.1 bits (62), Expect = 6.5
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 655 EEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKF 834
+ EG +E K I + ET G D +EK E L++ ++K + ++ K K
Sbjct: 1320 KSEGKKSEVMKAILKFYDETTG--DAKEKAEGKLKEACKEYSVKAFGEEKVAQFKAQYKK 1377
Query: 835 FEDENTQE 858
+DEN ++
Sbjct: 1378 LKDENAEQ 1385
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 29.1 bits (62), Expect = 6.5
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 655 EEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKF 834
+ EG E K I L ET G D +EK E L++ ++K + ++ K K
Sbjct: 1078 KSEGKKPEVMKAILALTDETTG--DAKEKAEGKLKEACKEYSVKAFGEEKVAQFKAQYKK 1135
Query: 835 FEDENTQE 858
+DEN ++
Sbjct: 1136 LKDENAEQ 1143
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 8.5
Identities = 16/66 (24%), Positives = 37/66 (56%)
Frame = +1
Query: 571 ETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVEL 750
+TL+ EG +E+ ++A+IR E ++ K+ QEL++ ++ + +K+E
Sbjct: 444 KTLKETAEGSRRRAIEQCN--EMVARIRGLEASLENQRKVEQELEMVKAENVRQAKKIEF 501
Query: 751 ILEQMR 768
+ E+++
Sbjct: 502 MKEEIQ 507
>Z48241-1|CAA88285.1| 346|Caenorhabditis elegans Hypothetical
protein C32A3.2 protein.
Length = 346
Score = 28.7 bits (61), Expect = 8.5
Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
Frame = +1
Query: 325 IDQLLALEKQTRTGADMVSTSRIL--VTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAV 498
I++L+A EK + A ++S +L ++ + + + + + S + Q K+ +
Sbjct: 117 INRLVANEKASFDAAAASASSEMLDDQALIGLLADVAGDAKVEKKLPPKSAQLRQEKRGL 176
Query: 499 VKMVQECYTYVDKT--PDKETKIKLIETLRTITEGKIYVEVER-ARLTHILAKIREEEGN 669
V + +E + ++ +E ++K ET+ + E +I ++ +R A L + K+ +EE
Sbjct: 177 VLLRKEIFYQAVQSGFTTEEARVKS-ETI--VNEAQIKLQEQRKALLNDVREKVEQEEVE 233
Query: 670 VAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISK 816
E ++ Q+L M+K K +LI ++ A D QI+SK
Sbjct: 234 ETERSEKDQKLFTMALEFMEKIYKDDLISSAVQFPTAHSD---QQILSK 279
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,074,727
Number of Sequences: 27780
Number of extensions: 437372
Number of successful extensions: 1189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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