Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F20
         (1198 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    51   7e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   2e-04
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    48   5e-04

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 50.8 bits (116), Expect = 7e-05
 Identities = 23/36 (63%), Positives = 26/36 (72%)
 Frame = +2

Query: 749 FPIGXAPXTXITKIDXQXKGGXXRRDYKNPRRXPLE 856
           F IG AP T ITKID Q +GG  R+DYK+ RR PLE
Sbjct: 16  FSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLE 51



 Score = 38.7 bits (86), Expect = 0.29
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +3

Query: 849 PWKXPXCAXXXRPCRXXXTXPPFPLXXAXAFLXXPXVG 962
           P + P CA   RPCR   T PPF L  A  FL    VG
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVG 86


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 49.6 bits (113), Expect = 2e-04
 Identities = 23/41 (56%), Positives = 25/41 (60%)
 Frame = +2

Query: 731 RPXGXXFPIGXAPXTXITKIDXQXKGGXXRRDYKNPRRXPL 853
           RP    F IG AP T I K D Q  GG  R+DYK+PRR PL
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPL 118


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 48.0 bits (109), Expect = 5e-04
 Identities = 23/43 (53%), Positives = 26/43 (60%)
 Frame = +2

Query: 725 VKRPXGXXFPIGXAPXTXITKIDXQXKGGXXRRDYKNPRRXPL 853
           V+ P    F IG AP T ITK D Q  GG  R+DYK+ RR PL
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPL 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,976,687
Number of Sequences: 1657284
Number of extensions: 6247057
Number of successful extensions: 6127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6122
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 120351836728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)