Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F18
         (1193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual      129   9e-31
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          88   2e-18
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    28   2.2  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   9.0  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  129 bits (311), Expect = 9e-31
 Identities = 78/204 (38%), Positives = 106/204 (51%), Gaps = 4/204 (1%)
 Frame = +2

Query: 239 LIPELCNQFYHLGWVXXXXXXXXXXXXXXXXXAPSGVQKERMIANDLFVQTIDDXXXXXX 418
           LI E+C   Y  GWV                 APSGVQKERM  + LFV ++        
Sbjct: 23  LICEICRDLYTSGWVTGTGDAIVI--------APSGVQKERMELHHLFVMSLITREYMRM 74

Query: 419 XXXXXXXXSQCTPLFMLAYR-MRNAGAVIHTHSPHAVRCTLLY--DKVFEITHQEMIKGI 589
                   SQCTPLF+  Y  +R+A A IHTHS  A+  + L+     F  T  E++  I
Sbjct: 75  PALRLKP-SQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSYI 133

Query: 590 -KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDT 766
            K +    + +  +K+ +P I NT  E DL  SL+EA+  YP T AV+VR HG+Y WGDT
Sbjct: 134 PKGSKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGIYCWGDT 193

Query: 767 WQQAKTMTECYDYLFEMAVEMKKL 838
           WQ  K  TE  ++LF+  +  ++L
Sbjct: 194 WQDTKMNTEAVEFLFQAYLRRRRL 217


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
 Frame = +2

Query: 485 NAGAVIHTHSPHAVRCTLLYDKVFEITHQEMIKGI-KDTSLGRYLRYDEKLVVPIIENTP 661
           +A A I++ S  AV  ++ Y++ F    +EMIKGI K      YL   + L VPII N  
Sbjct: 76  DAVACIYSTSVAAVGASM-YNEKFTTQSKEMIKGIPKGNPSAGYLCCFDTLEVPIIHNGD 134

Query: 662 FEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDTWQQAKTMTECYDYLFEMAVEMKKL 838
             K +   L++ ++ YP T AVL+R HGV  WG TW+++KT  ECY+YLFE+  ++K L
Sbjct: 135 -SKTILDELKKVIELYPQTCAVLIRGHGVIGWGATWEKSKTQMECYEYLFELDYKLKTL 192


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 542 YDKVFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGT 718
           YD + E+    +I  +++    R + Y +K +  +I N P + D A +L  A+ EY  T
Sbjct: 535 YDDIIEL--DPLIGSLENAR--RIVNYFKKNIPELIPNDPSDDDYAAALNYAVNEYVPT 589


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 521 AVRCTLLYDKVFEITHQEMIKGIKDTSLGRYLR 619
           AVRC     K     H+E IKG+K+  L   LR
Sbjct: 193 AVRCIRFATKYDFNIHEETIKGLKNPELHERLR 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,545
Number of Sequences: 5004
Number of extensions: 63955
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)