Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F17
         (1234 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 212 QHEQSSAQRLGCGHARQLRPIVGRQSRGAAAPAAVL 105
           +H   S +  G GH  Q   + G     A  P+A+L
Sbjct: 318 EHTPLSVKFPGMGHGLQPPDLAGTSQGSAGLPSAIL 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 594  HLRDSWPLRIGTSVAAMSLVAGTLTGAXMNPARXL 698
            HLR +     G +VA       T+TG  + PAR L
Sbjct: 1531 HLRVTAHNNAGFAVAEYEFATLTVTGGTIAPAREL 1565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,017
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42022050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)