Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F14
         (1253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341...    32   1.1  
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     32   1.1  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    31   1.4  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   5.8  

>06_02_0257 - 13533689-13533714,13533799-13533925,13534013-13534121,
            13534193-13534272,13534758-13534979,13536070-13536318,
            13537032-13537484,13539834-13540556
          Length = 662

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = +1

Query: 1039 PPPRXKKXFXPPGGXXXXKKXKKXGXGGGXPKXXRGGXXXXXXXXXXXXXPPP 1197
            PPPR K  F   GG        + G  GG     RGG             PPP
Sbjct: 18   PPPRSKPRFDRRGGPNPNNSYHRRGPPGGGGGDRRGGFQLPPDAAPPPPPPPP 70


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 5   YSPLHGHPFXSP*GXXCXXFXXFFFFFXLXVFXFXFXFFF 124
           + P  G P  +  G     F  FFFFF    F F F FFF
Sbjct: 44  HHPEEGLPRVATVGSKEDFFFFFFFFFFFFFFFFFFFFFF 83



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  FXXXFFFFFFXXCFFXFXXFFF 123
           F   FFFFFF   FF F  FFF
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFF 84



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  FXXXFFFFFFXXCFFXFXXFFF 123
           F   FFFFFF   FF F  FFF
Sbjct: 64  FFFFFFFFFFFFFFFFFFFFFF 85



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  FXXXFFFFFFXXCFFXFXXFFF 123
           F   FFFFFF   FF F  FFF
Sbjct: 65  FFFFFFFFFFFFFFFFFFFFFF 86


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  FXXXFFFFFFXXCFFXFXXFFF 123
           F   FFFFFF   FF F  FFF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 924 GGGWGXXPPXPGGXGG 877
           GGG G  PP PGG GG
Sbjct: 125 GGGGGARPPAPGGGGG 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,056,459
Number of Sequences: 37544
Number of extensions: 488347
Number of successful extensions: 1773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3876004116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)