Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F12
         (1196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0526 + 22944889-22944999,22945207-22945317,22945397-229455...   112   6e-25
05_07_0315 - 29165965-29166472,29167378-29167769                       29   5.5  
10_07_0196 + 13978647-13979142,13979242-13980542                       29   9.6  
03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   9.6  

>01_05_0526 +
           22944889-22944999,22945207-22945317,22945397-22945592,
           22946454-22946512,22946761-22946958,22947233-22947341,
           22947431-22947696
          Length = 349

 Score =  112 bits (269), Expect = 6e-25
 Identities = 55/139 (39%), Positives = 84/139 (60%)
 Frame = +3

Query: 489 MHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIWFYAETQKMCEAKPLQIVE 668
           M  V TNP  G+Y+ ++V G +GDFITSPE+SQ+FGE+ G+W     ++M + + + ++E
Sbjct: 1   MEEVLTNPQSGFYINRDVFGTSGDFITSPEVSQMFGEMTGVWAMCLWEQMGQPEKVNLIE 60

Query: 669 LGPGKATLLIDMLRVLNKIGYTSHDLSIHLVEISSTMQSIQANRLCVSHRPVEIDMPHNH 848
           LGPG+ TLL D+LR  +K    +  L+I+LVE S T+Q +Q N L     P+        
Sbjct: 61  LGPGRGTLLADLLRGSSKFVNFTKALNINLVECSPTLQKVQYNTLKCEDEPIG---DKTR 117

Query: 849 EGETLSGIKVYWYNDLKKV 905
               L G  V+W+  L++V
Sbjct: 118 TVSKLCGAPVHWHASLEQV 136


>05_07_0315 - 29165965-29166472,29167378-29167769
          Length = 299

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 23/81 (28%), Positives = 32/81 (39%)
 Frame = +3

Query: 438 IIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEISQLFGEILGIWF 617
           I++ K     P +VAEYMH+      +G     E+IG  G F       QL   + G+  
Sbjct: 218 IVQVKADFAAPPSVAEYMHL----RMKGAATAVEIIGSVGHFPQLVAPQQLLDILAGVLR 273

Query: 618 YAETQKMCEAKPLQIVELGPG 680
             E     E      VE+  G
Sbjct: 274 LREAAAEAEHDDAGTVEIAGG 294


>10_07_0196 + 13978647-13979142,13979242-13980542
          Length = 598

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +3

Query: 711 VLNKIGYTSHDLSIHLVEISSTMQSIQ--ANRLCVS-HRPVEIDMPHNHEG 854
           VLN +GYT + +S    E++  ++SI    ++LCVS +R    D   N EG
Sbjct: 443 VLNDLGYTKNTMSGFEDEMAYILESISRLEDKLCVSTNRLASDDAKINQEG 493


>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 414 ESAPNLIEIIKEKIRLNGPITVAEYMH-IVTTNPTEGYYMKKEVIGEAGDFITSPEISQL 590
           E A N+IE         GP+   + +  IV  +PT  Y   K  +   G+F++S E+ +L
Sbjct: 389 EEADNIIEASSSDQYTLGPVLAQDQLFTIVDFSPTWTYAGSKTRVFIKGNFLSSDEVKRL 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,103,958
Number of Sequences: 37544
Number of extensions: 421694
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)