Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F12
(1196 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004548-1|AAH04548.2| 441|Homo sapiens hypothetical protein PR... 161 5e-39
AC007390-2|AAY14816.1| 441|Homo sapiens unknown protein. 161 5e-39
BX538031-1|CAD97976.1| 343|Homo sapiens hypothetical protein pr... 58 8e-08
AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein. 32 4.7
BC019330-1|AAH19330.1| 529|Homo sapiens PODXL2 protein protein. 31 6.3
S82686-1|AAD14414.1| 173|Homo sapiens m patient IV-2, Genomic, ... 31 8.3
>BC004548-1|AAH04548.2| 441|Homo sapiens hypothetical protein
PRO1853 protein.
Length = 441
Score = 161 bits (391), Expect = 5e-39
Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 5/202 (2%)
Frame = +3
Query: 405 PTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEIS 584
P ++ + KI+ GPITVAEYM V TNP +GYY+ ++++GE GDFITSPEIS
Sbjct: 35 PAENPVTPMLRHLMYKIKSTGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEIS 94
Query: 585 QLFGEILGIWFYAETQKMCEAKPLQIVELGPGKATLLIDMLRVLNKIG--YTSHDLSIHL 758
Q+FGE+LGIWF +E ++ Q+VELGPG+ TL+ D+LRV ++G + D+S+HL
Sbjct: 95 QIFGELLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHL 154
Query: 759 VEISSTMQSIQANRLCVSHRPVE--IDMPHNHEGETLSGIKVYWYNDLKKVXK-TSHGMX 929
VE+S + IQA L P+E P +G T SGI + WY DL V K S +
Sbjct: 155 VEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLA 214
Query: 930 HMNFLMSSPYXSLKNRKXWREL 995
H F + + K + WRE+
Sbjct: 215 HEFFDVLPVHKFQKTPQGWREV 236
>AC007390-2|AAY14816.1| 441|Homo sapiens unknown protein.
Length = 441
Score = 161 bits (391), Expect = 5e-39
Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 5/202 (2%)
Frame = +3
Query: 405 PTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEIS 584
P ++ + KI+ GPITVAEYM V TNP +GYY+ ++++GE GDFITSPEIS
Sbjct: 35 PAENPVTPMLRHLMYKIKSTGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEIS 94
Query: 585 QLFGEILGIWFYAETQKMCEAKPLQIVELGPGKATLLIDMLRVLNKIG--YTSHDLSIHL 758
Q+FGE+LGIWF +E ++ Q+VELGPG+ TL+ D+LRV ++G + D+S+HL
Sbjct: 95 QIFGELLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHL 154
Query: 759 VEISSTMQSIQANRLCVSHRPVE--IDMPHNHEGETLSGIKVYWYNDLKKVXK-TSHGMX 929
VE+S + IQA L P+E P +G T SGI + WY DL V K S +
Sbjct: 155 VEVSQKLSEIQALTLTKEKVPLERNAGSPVYMKGVTKSGIPISWYRDLHDVPKGYSFYLA 214
Query: 930 HMNFLMSSPYXSLKNRKXWREL 995
H F + + K + WRE+
Sbjct: 215 HEFFDVLPVHKFQKTPQGWREV 236
>BX538031-1|CAD97976.1| 343|Homo sapiens hypothetical protein
protein.
Length = 343
Score = 57.6 bits (133), Expect = 8e-08
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +3
Query: 405 PTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYMKKEVIGEAGDFITSPEIS 584
P ++ + KI+ GPITVAEYM KEV+ T+P
Sbjct: 35 PAENPVTPMLRHLMYKIKSTGPITVAEYM--------------KEVL-------TNP--- 70
Query: 585 QLFGEILGIWFYAETQKMCEAKPLQIVELGPGKATLLIDMLRVLNKIG--YTSHDLSIHL 758
++LGIWF +E ++ Q+VELGPG+ TL+ D+LRV ++G + D+S+HL
Sbjct: 71 ---AKLLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHL 127
Query: 759 VE 764
VE
Sbjct: 128 VE 129
>AB002340-1|BAA20800.3| 2467|Homo sapiens KIAA0342 protein protein.
Length = 2467
Score = 31.9 bits (69), Expect = 4.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 624 ETQKMCEAKPLQIVELGPGKATLLIDMLRVLNKI 725
E CEA+P +I+ L PG +L+ ++R L ++
Sbjct: 1566 EAASQCEAEPEKILGLAPGGLEILLSLVRALKRV 1599
>BC019330-1|AAH19330.1| 529|Homo sapiens PODXL2 protein protein.
Length = 529
Score = 31.5 bits (68), Expect = 6.3
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = +3
Query: 375 KRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTE-GYYMKKEVIGE 551
+ PD L T S+P L+ +++E + +G + HI + P+E ++ ++GE
Sbjct: 319 EHPDEDPLGSRTSASSPQLLALVEEVLPRHGSGHHGAW-HISLSKPSEKEQHLLMTLVGE 377
Query: 552 AGDFITSPEISQLFGEI------LGIWFYAETQKMCEAKPLQI 662
G + + ++ + G+I +GI Y+ T C+A+ Q+
Sbjct: 378 QG-VVPTQDVLSMLGDIRRSLEEIGIQNYSTTSS-CQARASQV 418
>S82686-1|AAD14414.1| 173|Homo sapiens m patient IV-2, Genomic,
1040 nt, segment 3 of 3]. protein.
Length = 173
Score = 31.1 bits (67), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 864 SGIKVYWYNDLKKVXKTSHGMXHMNFLMSSPYXSLKN 974
S I+V W N K++ + H H+ S+PY KN
Sbjct: 124 SSIQVAWPNSYKEIFQNRHKQEHLENTWSAPYPYSKN 160
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,464,948
Number of Sequences: 237096
Number of extensions: 2549751
Number of successful extensions: 3882
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3861
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16844146380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -