Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F12
         (1196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-10|CAA87427.3|  426|Caenorhabditis elegans Hypothetical p...   142   6e-34
AC024757-5|AAK68430.1|  814|Caenorhabditis elegans Hypothetical ...    31   2.1  
U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeo...    29   8.6  
U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeo...    29   8.6  
U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.       29   8.6  

>Z47357-10|CAA87427.3|  426|Caenorhabditis elegans Hypothetical
           protein ZK1128.1 protein.
          Length = 426

 Score =  142 bits (343), Expect = 6e-34
 Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 5/220 (2%)
 Frame = +3

Query: 351 REYSYKTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVAEYMHIVTTNPTEGYYM 530
           R+YS + +K P        +PE   +L + + +KIR++GPITVAEYM    + P  GYY 
Sbjct: 14  RQYSKQILKPPG-----YASPEKTNHLKKFLVDKIRVSGPITVAEYMKTCVSAPLVGYYG 68

Query: 531 K----KEVIGEAGDFITSPEISQLFGEILGIWFYAETQKMCEAKPLQIVELGPGKATLLI 698
           +    ++V G  GDFITSPE++QLFGE++G+W + E          Q+VELGPG+A L+ 
Sbjct: 69  QFSKDQKVFGAKGDFITSPELTQLFGEMIGVWVFHELANTGHKGSWQLVELGPGRAQLMN 128

Query: 699 DMLRVLNKIGYTSHDLSIHLVEISSTMQSIQANRLCVSHRPVEIDMPHNHEGETLSGIKV 878
           D+L  L K  +   D+S+HLVE S  +   Q   LC+      ID P   + +T +G+ +
Sbjct: 129 DVLNALAK--FNDKDVSVHLVETSDALIDEQEKSLCIYTSKNSIDTPFIRKNKTRTGVNI 186

Query: 879 YWYNDLKKVXKTSHGMXHMNFLMSSPYXSL-KNRKXWREL 995
           YWY  +  +           FL + P     K+   W E+
Sbjct: 187 YWYKSIDDIPDGFTVFIGNEFLDALPIHQFHKSGDSWNEV 226


>AC024757-5|AAK68430.1|  814|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.8 protein.
          Length = 814

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 366 KTIKRPDPRTLKMPTPESAPNLIEIIKEKIRLNGPITVA 482
           K +++ DP  +K+  P   P+L ++I+    L G +T A
Sbjct: 75  KCVEKQDPAEIKVSAPRPTPSLDDVIERSPELLGSLTTA 113


>U39740-3|AAA80426.2|  542|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform a protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
 Frame = +3

Query: 630 QKMCEAKPL-----QIVELG-PGKATL--LIDMLRVLNKIGYTSHDLSIHLVEISSTMQS 785
           + MC+ +PL       VE+   G AT+  LID   + N   +T H + IH   IS+++ S
Sbjct: 347 KNMCKLRPLLKEWLADVEMAIEGGATVTDLIDKKTIHNGNHHTIHHVDIHETSISNSISS 406

Query: 786 IQANRL 803
           + A+ L
Sbjct: 407 VTASSL 412


>U39740-2|AAM69077.1|  540|Caenorhabditis elegans C.elegans homeobox
           protein 18,isoform b protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
 Frame = +3

Query: 630 QKMCEAKPL-----QIVELG-PGKATL--LIDMLRVLNKIGYTSHDLSIHLVEISSTMQS 785
           + MC+ +PL       VE+   G AT+  LID   + N   +T H + IH   IS+++ S
Sbjct: 345 KNMCKLRPLLKEWLADVEMAIEGGATVTDLIDKKTIHNGNHHTIHHVDIHETSISNSISS 404

Query: 786 IQANRL 803
           + A+ L
Sbjct: 405 VTASSL 410


>U16367-1|AAA52203.1|  542|Caenorhabditis elegans CEH-18 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
 Frame = +3

Query: 630 QKMCEAKPL-----QIVELG-PGKATL--LIDMLRVLNKIGYTSHDLSIHLVEISSTMQS 785
           + MC+ +PL       VE+   G AT+  LID   + N   +T H + IH   IS+++ S
Sbjct: 347 KNMCKLRPLLKEWLADVEMAIEGGATVTDLIDKKTIHNGNHHTIHHVDIHETSISNSISS 406

Query: 786 IQANRL 803
           + A+ L
Sbjct: 407 VTASSL 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,670,692
Number of Sequences: 27780
Number of extensions: 406039
Number of successful extensions: 983
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)