Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F12
         (1196 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   1.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 531 KKEVIGEAGDFITSPEISQLFGEILGIWFYAETQKMCEAKPLQIVEL 671
           K+  +GE  +  T PE++ LF +I+G      T+    A P+ ++ +
Sbjct: 474 KRLWLGETIEAKTYPEVTMLFSDIVGF-----TEICSTATPMMVINM 515


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 319 IFSNILEFICVHFL 278
           I++++LEF+CV+++
Sbjct: 374 IYASLLEFVCVNYV 387


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 319 IFSNILEFICVHFL 278
           I++++LEF+CV+++
Sbjct: 343 IYASLLEFVCVNYV 356


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 319 IFSNILEFICVHFL 278
           I++++LEF+CV+++
Sbjct: 394 IYASLLEFVCVNYV 407


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 6/14 (42%), Positives = 14/14 (100%)
 Frame = -2

Query: 319 IFSNILEFICVHFL 278
           I++++LEF+CV+++
Sbjct: 343 IYASLLEFVCVNYV 356


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 712 TLNISISNVAFPGPSSTICSGF 647
           TL+++ SN+ +PG   T   GF
Sbjct: 387 TLSVNESNITWPGRLQTKPEGF 408


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 1016 SRSSXX*ELSPPFSVFQTXVWGGHQ 942
            SRSS    L PP SV +T   GG+Q
Sbjct: 1845 SRSSLR-TLLPPISVAETTFVGGNQ 1868


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 1016 SRSSXX*ELSPPFSVFQTXVWGGHQ 942
            SRSS    L PP SV +T   GG+Q
Sbjct: 1841 SRSSLR-TLLPPISVAETTFVGGNQ 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,064
Number of Sequences: 438
Number of extensions: 4758
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40849839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)