BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F11
(1228 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 93 5e-20
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 70 6e-13
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 67 4e-12
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 56 1e-08
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 56 1e-08
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 54 4e-08
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 38 0.004
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 33 0.061
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 33 0.081
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 32 0.14
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 30 0.75
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 1.00
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 28 3.0
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 5.3
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 7.0
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 7.0
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce... 27 7.0
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 27 7.0
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 26 9.3
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 26 9.3
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 93.5 bits (222), Expect = 5e-20
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 2/246 (0%)
Frame = +2
Query: 203 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPEN--AAYYGNRSACYMMLCMYK 376
+ P LAE++K GN YK K Y A+ Y EAI L ++ A YY NR+A YM + ++
Sbjct: 17 QEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFE 76
Query: 377 KALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELGGVECVSGELRALE 556
AL DA+++ + P K R + L +LN + + + G AL
Sbjct: 77 LALCDAKQSDRIKPDVPKTQSRIRQAYEGL-SILNEAEVYLKNKQAG---------LALN 126
Query: 557 TLKRLHEDAQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIAN 736
L RL QR +D+ P + L KA+ AQ+IA+
Sbjct: 127 ALDRL----QRRIDSTT--------------QPPMSWMYL-KAQVYIFQNDMDRAQKIAH 167
Query: 737 DLLRLDSQDTEAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKK 916
D+LRL+ ++ EA+ +RG +Y+ + +A HFQ+ L+L+PD A +K+ + L+ K
Sbjct: 168 DVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTK 227
Query: 917 EEGMKL 934
+G L
Sbjct: 228 NQGNDL 233
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 70.1 bits (164), Expect = 6e-13
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Frame = +2
Query: 221 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 400
AEE + GN L+K ++ A+ Y E K P + +GNR+A Y+ + + + D K
Sbjct: 399 AEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNK 458
Query: 401 AVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELGGVECVSGE-LRALET 559
A+ LDP F K Y+R A+ L D A A+E+ E +G+ LR +E+
Sbjct: 459 AIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIES 512
Score = 67.3 bits (157), Expect = 4e-12
Identities = 41/100 (41%), Positives = 50/100 (50%)
Frame = +2
Query: 218 LAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQ 397
+AEE K GN + K+YK A+ + +AI L N Y NRSACY Y AL+DA
Sbjct: 1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDAT 60
Query: 398 KAVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELG 517
K L P + KG+ R LGDL A R A E G
Sbjct: 61 KCTELKPDWAKGWSRKGAALHGLGDL----DAARSAYEEG 96
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 67.3 bits (157), Expect = 4e-12
Identities = 33/97 (34%), Positives = 54/97 (55%)
Frame = +2
Query: 221 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 400
AE+ K GN K+Y+ AL +Y +AI++ P + YY NR+A Y L ++ A+EDA
Sbjct: 83 AEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALT 142
Query: 401 AVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATE 511
+SLDP + + R + ++LGD A ++ +
Sbjct: 143 CLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLD 179
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 56.0 bits (129), Expect = 1e-08
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Frame = +2
Query: 209 PESLAEEKKDSGNYLYKFKNYKGALAMYDEAI-KLCPEN---AAYYGNRSACYMMLCMYK 376
P +A+ ++ GN + K YK A Y +A+ + C + A Y NR+AC ++ Y+
Sbjct: 60 PHEVAQNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYR 119
Query: 377 KALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVR 499
+ L D + + D T K Y R+AK +AL ++ +R
Sbjct: 120 QVLNDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIR 160
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/86 (33%), Positives = 46/86 (53%)
Frame = +2
Query: 218 LAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQ 397
LA E K GN Y K Y A+ Y +AI C + ++ NR+ACY + +++ ++D
Sbjct: 150 LAAELKTLGNKAYGQKEYANAIDYYTQAIT-CSHDPIFFSNRAACYAAIGDFEQVIKDTS 208
Query: 398 KAVSLDPTFTKGYIRAAKCCIALGDL 475
+A+SLD ++ K R + LG L
Sbjct: 209 EALSLDSSYVKALNRRSAAYEQLGKL 234
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 54.0 bits (124), Expect = 4e-08
Identities = 30/82 (36%), Positives = 42/82 (51%)
Frame = +2
Query: 221 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 400
A E K+ N K + A+ +Y +AI+L NA Y NRS ++ Y A+ DA K
Sbjct: 5 ALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASK 64
Query: 401 AVSLDPTFTKGYIRAAKCCIAL 466
A+ DP + K Y R A IA+
Sbjct: 65 AIECDPEYAKAYFRRATAHIAI 86
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 37.5 bits (83), Expect = 0.004
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 11/181 (6%)
Frame = +2
Query: 254 YKFKNYKGALAMYDEAIKL---CPENAAYYGNRS----ACYMMLCMYKKALEDAQKA--- 403
Y F N G L +A++ C + RS A Y LC+ +E A A
Sbjct: 930 YVFWNMLGVLFSQTKAVRSAQHCYIQSLLLNERSSGVWANYGALCIQNHDVECANAAFTR 989
Query: 404 -VSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELGGVECVSGELRALETLKRLHED 580
+S+DP ++ ++ A C IA+G + Q + A E+ + +T+
Sbjct: 990 SISIDPDNSQAWLGKAYCSIAVGSIRKAVQIIHHAFEISSGKMPDVNYWYADTMLHAVNT 1049
Query: 581 AQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQ 760
D + + R L +P+ T KA L LG ++ A L L Q
Sbjct: 1050 EDFVTTDGDIWSATYAIKRYLGENPTDTFAYYIKASLLEHLGETTDSVPSAIRLCELLEQ 1109
Query: 761 D 763
+
Sbjct: 1110 E 1110
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 33.5 bits (73), Expect = 0.061
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 629 MDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAIYVRGLCLYFED 808
+D +D++P+ + +TKA G Q A EI + +LD QD ++ G C +
Sbjct: 403 VDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHARKLDLQDR---FINGKCAKYML 459
Query: 809 RDEQ 820
R+++
Sbjct: 460 RNDE 463
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 33.1 bits (72), Expect = 0.081
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 215 SLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCP----ENAAYYGNRSACYMMLCMYKKA 382
+L EE++ +GN L++ ++ A+ + ++ P + NRS CY + K
Sbjct: 410 ALVEEQQSTGNELFRKGDFSQAIEEFTNSLSQLPAKHTKRVPLLSNRSLCYQKVGDLKTC 469
Query: 383 LEDAQKAVSL 412
L+D + V +
Sbjct: 470 LQDVDELVDI 479
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +2
Query: 203 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMML 364
+S ES+ +YL KF + ++ + D A+ CP NA+ SA +++L
Sbjct: 201 RSSESVENASNLISDYLKKFGKPRQSIELPDIAVDACPSNASRIQTLSAAWLLL 254
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 29.9 bits (64), Expect = 0.75
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 743 LRLDSQDTEAIYVRGLCLYFEDRD-EQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKE 919
L ++ Q+T + + YFE D E++ + FQ++ L+P K +E + A QK
Sbjct: 355 LPIEQQNTPFVLAKLGITYFELVDYEKSEEVFQKLRDLSPSRVKDMEVFSTALWHLQKSV 414
Query: 920 EGMKLQNGTLATSP 961
L + TL T+P
Sbjct: 415 PLSYLAHETLETNP 428
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 263 KNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQKAVSLDP 418
K+YK AL YD A KL +++ ++ ++L + KAL + ++ ++ P
Sbjct: 547 KDYKKALDFYDRACKLDEKSSLARFKKAKVLILLHDHDKALVELEQLKAIAP 598
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/87 (17%), Positives = 40/87 (45%)
Frame = +2
Query: 605 DYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAIYVR 784
++ + + C++R + P+ + + ++++ +R++ + A Y
Sbjct: 446 EHSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGL 505
Query: 785 GLCLYFEDRDEQAFKHFQQVLRLNPDH 865
G+ R++QA HFQ+ +NP++
Sbjct: 506 GMVYLKTGRNDQADFHFQRAAEINPNN 532
Score = 26.2 bits (55), Expect = 9.3
Identities = 19/90 (21%), Positives = 35/90 (38%)
Frame = +2
Query: 605 DYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAIYVR 784
DY + + D SPS K + L L + +A++ L + E+ +
Sbjct: 378 DYEKSEEVFQKLRDLSPSRVKDMEVFSTALWHLQKSVPLSYLAHETLETNPYSPESWCIL 437
Query: 785 GLCLYFEDRDEQAFKHFQQVLRLNPDHKKA 874
C + QA K + ++L+P + A
Sbjct: 438 ANCFSLQREHSQALKCINRAIQLDPTFEYA 467
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 29.5 bits (63), Expect = 1.00
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 800 FEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGMKLQNGTLA 952
+ D+++QA++++++ + + KK E + + L+QK E + Q TLA
Sbjct: 48 YVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNERRRRTQGKTLA 98
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 485 EQAVRRATELGGVECVSGELRALETLKR--LHEDAQRALDANDYRRVVFCMDRCLDYS 652
E+ + AT G VE ++ + R + L +R D DY+R V C C++ S
Sbjct: 434 EKKSKHATSNGTVETLNTKFRLIHVFANCELMSSHRRFPDWGDYQREVTCCRNCVERS 491
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/84 (23%), Positives = 33/84 (39%)
Frame = +2
Query: 596 DANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAI 775
+ DY + C L SP+ A A LG Q + N LL+LDS + E
Sbjct: 88 ETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDNWNRLLQLDSSNLEYR 147
Query: 776 YVRGLCLYFEDRDEQAFKHFQQVL 847
L + +++ + Q ++
Sbjct: 148 LCFTLSAFLSGNYKESLEQIQYLI 171
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +2
Query: 263 KNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQKAVSLD 415
K+Y +L Y A+ + P N + + + + L +Y+ ++ + + LD
Sbjct: 90 KDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDNWNRLLQLD 140
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +2
Query: 866 KKAVETYKRAKLLKQKKEEGMKLQNGTLATSPRTYTKRYYXQNNRTVN 1009
+KA ++ + AKL ++++EE Q ++ R +++Y + N
Sbjct: 67 RKAYDSERFAKLARKRREEAFNFQRKSMVDDLRERERQFYDSLEKKEN 114
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 7.0
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +2
Query: 248 YLYKFKNYKGALAMYDEAIKLCPENA----AYYGNRSACYMMLCMYKKALEDAQKAVSLD 415
Y+Y KNY+G + + + I+ ++ YY A Y + +KA+ QKA + D
Sbjct: 298 YVYSKKNYEGCIKLAENVIQNSFSSSLIADGYYWMGRA-YHQMGNNEKAMASYQKAKAAD 356
Query: 416 PTFTKGYIRAAKCCIALGDLLNGEQAVRRATE 511
+ + I DL + + R E
Sbjct: 357 DRHLLSSVGIGQIQILQNDLTSAKLTFERIAE 388
>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 752 DSQDTEAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDH-KKAVETY 886
DS D ++ L L +D D + K +++ + NP + K + ET+
Sbjct: 166 DSADAANVHCPVLFLCSKDEDAKIIKEWEEAFKTNPAYAKSSFETF 211
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = +2
Query: 242 GNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQKAVSLDPT 421
G +Y K Y+ + + +A++ P N + A +A+ +AVSL P
Sbjct: 445 GIIMYMLKEYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQ 504
Query: 422 FTKGYIRAAKCCIALG 469
+ + A I LG
Sbjct: 505 YVRVRSNMAVSNINLG 520
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 203 KSPESLAEEKKDSGNYLYKFKNYKGALA 286
++ E L EEK D + LY+F+ Y+ +A
Sbjct: 265 RNVEILKEEKNDLESKLYRFEEYRDKVA 292
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 200 PKSPESLA-EEKKDSGNYLYKFKNYKGALAMYDEAI 304
P S +S A E+ GN Y KNY+ A+ Y +A+
Sbjct: 24 PSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQAL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,034,633
Number of Sequences: 5004
Number of extensions: 78161
Number of successful extensions: 280
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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