SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F11
         (1228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    93   5e-20
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    70   6e-13
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    67   4e-12
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    56   1e-08
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    56   1e-08
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    54   4e-08
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    38   0.004
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    33   0.061
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    33   0.081
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    32   0.14 
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    30   0.75 
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    29   1.00 
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    28   3.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   5.3  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    27   7.0  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   7.0  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    27   7.0  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   7.0  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   9.3  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    26   9.3  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 93.5 bits (222), Expect = 5e-20
 Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 2/246 (0%)
 Frame = +2

Query: 203 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPEN--AAYYGNRSACYMMLCMYK 376
           + P  LAE++K  GN  YK K Y  A+  Y EAI L  ++  A YY NR+A YM +  ++
Sbjct: 17  QEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFE 76

Query: 377 KALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELGGVECVSGELRALE 556
            AL DA+++  + P   K   R  +    L  +LN  +   +  + G          AL 
Sbjct: 77  LALCDAKQSDRIKPDVPKTQSRIRQAYEGL-SILNEAEVYLKNKQAG---------LALN 126

Query: 557 TLKRLHEDAQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIAN 736
            L RL    QR +D+                 P  +   L KA+          AQ+IA+
Sbjct: 127 ALDRL----QRRIDSTT--------------QPPMSWMYL-KAQVYIFQNDMDRAQKIAH 167

Query: 737 DLLRLDSQDTEAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKK 916
           D+LRL+ ++ EA+ +RG  +Y+   + +A  HFQ+ L+L+PD   A   +K+ + L+  K
Sbjct: 168 DVLRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTK 227

Query: 917 EEGMKL 934
            +G  L
Sbjct: 228 NQGNDL 233


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
 Frame = +2

Query: 221 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 400
           AEE +  GN L+K  ++  A+  Y E  K  P +   +GNR+A Y+ +    + + D  K
Sbjct: 399 AEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNK 458

Query: 401 AVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELGGVECVSGE-LRALET 559
           A+ LDP F K Y+R A+    L D      A   A+E+   E  +G+ LR +E+
Sbjct: 459 AIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIES 512



 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 41/100 (41%), Positives = 50/100 (50%)
 Frame = +2

Query: 218 LAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQ 397
           +AEE K  GN  +  K+YK A+  + +AI L   N   Y NRSACY     Y  AL+DA 
Sbjct: 1   MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDAT 60

Query: 398 KAVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELG 517
           K   L P + KG+ R       LGDL     A R A E G
Sbjct: 61  KCTELKPDWAKGWSRKGAALHGLGDL----DAARSAYEEG 96


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 33/97 (34%), Positives = 54/97 (55%)
 Frame = +2

Query: 221 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 400
           AE+ K  GN     K+Y+ AL +Y +AI++ P +  YY NR+A Y  L  ++ A+EDA  
Sbjct: 83  AEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALT 142

Query: 401 AVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATE 511
            +SLDP   + + R  +  ++LGD      A ++  +
Sbjct: 143 CLSLDPHHARAFGRLGRAKLSLGDAAAAADAYKKGLD 179


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
 Frame = +2

Query: 209 PESLAEEKKDSGNYLYKFKNYKGALAMYDEAI-KLCPEN---AAYYGNRSACYMMLCMYK 376
           P  +A+  ++ GN  +  K YK A   Y +A+ + C +     A Y NR+AC ++   Y+
Sbjct: 60  PHEVAQNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYR 119

Query: 377 KALEDAQKAVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVR 499
           + L D  + +  D T  K Y R+AK  +AL      ++ +R
Sbjct: 120 QVLNDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIR 160


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 29/86 (33%), Positives = 46/86 (53%)
 Frame = +2

Query: 218 LAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQ 397
           LA E K  GN  Y  K Y  A+  Y +AI  C  +  ++ NR+ACY  +  +++ ++D  
Sbjct: 150 LAAELKTLGNKAYGQKEYANAIDYYTQAIT-CSHDPIFFSNRAACYAAIGDFEQVIKDTS 208

Query: 398 KAVSLDPTFTKGYIRAAKCCIALGDL 475
           +A+SLD ++ K   R +     LG L
Sbjct: 209 EALSLDSSYVKALNRRSAAYEQLGKL 234


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 30/82 (36%), Positives = 42/82 (51%)
 Frame = +2

Query: 221 AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 400
           A E K+  N   K  +   A+ +Y +AI+L   NA  Y NRS  ++    Y  A+ DA K
Sbjct: 5   ALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDASK 64

Query: 401 AVSLDPTFTKGYIRAAKCCIAL 466
           A+  DP + K Y R A   IA+
Sbjct: 65  AIECDPEYAKAYFRRATAHIAI 86


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 11/181 (6%)
 Frame = +2

Query: 254  YKFKNYKGALAMYDEAIKL---CPENAAYYGNRS----ACYMMLCMYKKALEDAQKA--- 403
            Y F N  G L    +A++    C   +     RS    A Y  LC+    +E A  A   
Sbjct: 930  YVFWNMLGVLFSQTKAVRSAQHCYIQSLLLNERSSGVWANYGALCIQNHDVECANAAFTR 989

Query: 404  -VSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELGGVECVSGELRALETLKRLHED 580
             +S+DP  ++ ++  A C IA+G +    Q +  A E+   +         +T+      
Sbjct: 990  SISIDPDNSQAWLGKAYCSIAVGSIRKAVQIIHHAFEISSGKMPDVNYWYADTMLHAVNT 1049

Query: 581  AQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQ 760
                    D     + + R L  +P+ T     KA  L  LG   ++   A  L  L  Q
Sbjct: 1050 EDFVTTDGDIWSATYAIKRYLGENPTDTFAYYIKASLLEHLGETTDSVPSAIRLCELLEQ 1109

Query: 761  D 763
            +
Sbjct: 1110 E 1110


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 33.5 bits (73), Expect = 0.061
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 629 MDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAIYVRGLCLYFED 808
           +D  +D++P+  +  +TKA      G  Q A EI +   +LD QD    ++ G C  +  
Sbjct: 403 VDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHARKLDLQDR---FINGKCAKYML 459

Query: 809 RDEQ 820
           R+++
Sbjct: 460 RNDE 463


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 33.1 bits (72), Expect = 0.081
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +2

Query: 215 SLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCP----ENAAYYGNRSACYMMLCMYKKA 382
           +L EE++ +GN L++  ++  A+  +  ++   P    +      NRS CY  +   K  
Sbjct: 410 ALVEEQQSTGNELFRKGDFSQAIEEFTNSLSQLPAKHTKRVPLLSNRSLCYQKVGDLKTC 469

Query: 383 LEDAQKAVSL 412
           L+D  + V +
Sbjct: 470 LQDVDELVDI 479


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 203 KSPESLAEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMML 364
           +S ES+        +YL KF   + ++ + D A+  CP NA+     SA +++L
Sbjct: 201 RSSESVENASNLISDYLKKFGKPRQSIELPDIAVDACPSNASRIQTLSAAWLLL 254


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 743 LRLDSQDTEAIYVRGLCLYFEDRD-EQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKE 919
           L ++ Q+T  +  +    YFE  D E++ + FQ++  L+P   K +E +  A    QK  
Sbjct: 355 LPIEQQNTPFVLAKLGITYFELVDYEKSEEVFQKLRDLSPSRVKDMEVFSTALWHLQKSV 414

Query: 920 EGMKLQNGTLATSP 961
               L + TL T+P
Sbjct: 415 PLSYLAHETLETNP 428



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 263 KNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQKAVSLDP 418
           K+YK AL  YD A KL  +++     ++   ++L  + KAL + ++  ++ P
Sbjct: 547 KDYKKALDFYDRACKLDEKSSLARFKKAKVLILLHDHDKALVELEQLKAIAP 598



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/87 (17%), Positives = 40/87 (45%)
 Frame = +2

Query: 605 DYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAIYVR 784
           ++ + + C++R +   P+       +    +     ++++      +R++ +   A Y  
Sbjct: 446 EHSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNAWYGL 505

Query: 785 GLCLYFEDRDEQAFKHFQQVLRLNPDH 865
           G+      R++QA  HFQ+   +NP++
Sbjct: 506 GMVYLKTGRNDQADFHFQRAAEINPNN 532



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 19/90 (21%), Positives = 35/90 (38%)
 Frame = +2

Query: 605 DYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAIYVR 784
           DY +      +  D SPS  K     +  L  L +      +A++ L  +    E+  + 
Sbjct: 378 DYEKSEEVFQKLRDLSPSRVKDMEVFSTALWHLQKSVPLSYLAHETLETNPYSPESWCIL 437

Query: 785 GLCLYFEDRDEQAFKHFQQVLRLNPDHKKA 874
             C   +    QA K   + ++L+P  + A
Sbjct: 438 ANCFSLQREHSQALKCINRAIQLDPTFEYA 467


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +2

Query: 800 FEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGMKLQNGTLA 952
           + D+++QA++++++  +   + KK  E   + + L+QK E   + Q  TLA
Sbjct: 48  YVDQEQQAYENWKKQEQEEINRKKEEELKSKFEKLRQKNERRRRTQGKTLA 98


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 485 EQAVRRATELGGVECVSGELRALETLKR--LHEDAQRALDANDYRRVVFCMDRCLDYS 652
           E+  + AT  G VE ++ + R +       L    +R  D  DY+R V C   C++ S
Sbjct: 434 EKKSKHATSNGTVETLNTKFRLIHVFANCELMSSHRRFPDWGDYQREVTCCRNCVERS 491


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 20/84 (23%), Positives = 33/84 (39%)
 Frame = +2

Query: 596 DANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDSQDTEAI 775
           +  DY   + C    L  SP+        A   A LG  Q   +  N LL+LDS + E  
Sbjct: 88  ETKDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDNWNRLLQLDSSNLEYR 147

Query: 776 YVRGLCLYFEDRDEQAFKHFQQVL 847
               L  +     +++ +  Q ++
Sbjct: 148 LCFTLSAFLSGNYKESLEQIQYLI 171



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 263 KNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQKAVSLD 415
           K+Y  +L  Y  A+ + P N + + + +     L +Y+   ++  + + LD
Sbjct: 90  KDYNNSLKCYQNALAISPNNESLWYDAAYLQAQLGLYQPLFDNWNRLLQLD 140


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
            Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 866  KKAVETYKRAKLLKQKKEEGMKLQNGTLATSPRTYTKRYYXQNNRTVN 1009
            +KA ++ + AKL ++++EE    Q  ++    R   +++Y    +  N
Sbjct: 67   RKAYDSERFAKLARKRREEAFNFQRKSMVDDLRERERQFYDSLEKKEN 114


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = +2

Query: 248 YLYKFKNYKGALAMYDEAIKLCPENA----AYYGNRSACYMMLCMYKKALEDAQKAVSLD 415
           Y+Y  KNY+G + + +  I+    ++     YY    A Y  +   +KA+   QKA + D
Sbjct: 298 YVYSKKNYEGCIKLAENVIQNSFSSSLIADGYYWMGRA-YHQMGNNEKAMASYQKAKAAD 356

Query: 416 PTFTKGYIRAAKCCIALGDLLNGEQAVRRATE 511
                  +   +  I   DL + +    R  E
Sbjct: 357 DRHLLSSVGIGQIQILQNDLTSAKLTFERIAE 388


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 752 DSQDTEAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDH-KKAVETY 886
           DS D   ++   L L  +D D +  K +++  + NP + K + ET+
Sbjct: 166 DSADAANVHCPVLFLCSKDEDAKIIKEWEEAFKTNPAYAKSSFETF 211


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +2

Query: 242 GNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQKAVSLDPT 421
           G  +Y  K Y+ +   + +A++  P N   +    A         +A+    +AVSL P 
Sbjct: 445 GIIMYMLKEYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQ 504

Query: 422 FTKGYIRAAKCCIALG 469
           + +     A   I LG
Sbjct: 505 YVRVRSNMAVSNINLG 520


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 203 KSPESLAEEKKDSGNYLYKFKNYKGALA 286
           ++ E L EEK D  + LY+F+ Y+  +A
Sbjct: 265 RNVEILKEEKNDLESKLYRFEEYRDKVA 292


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 200 PKSPESLA-EEKKDSGNYLYKFKNYKGALAMYDEAI 304
           P S +S A E+    GN  Y  KNY+ A+  Y +A+
Sbjct: 24  PSSSDSRAIEQLVTQGNMAYAQKNYEEAVDKYGQAL 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,034,633
Number of Sequences: 5004
Number of extensions: 78161
Number of successful extensions: 280
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -