Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F10
(1222 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 230 3e-61
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 219 5e-58
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 69 2e-12
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 33 0.080
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 31 0.25
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 29 0.99
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 28 2.3
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 4.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 7.0
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 9.2
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces... 26 9.2
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 9.2
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 9.2
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 9.2
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 230 bits (563), Expect = 3e-61
Identities = 108/284 (38%), Positives = 176/284 (61%), Gaps = 10/284 (3%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 359
MI GLF++N KG LI +R D+ ++ + FRV ++ R P+ +I +++ + K
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSIGSSTYIYTKH 59
Query: 360 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 539
++++ A+TK N N +V EFL +I + YFGK++E +K+N I+ELLDE++D+G
Sbjct: 60 EDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGI 119
Query: 540 PQNSDTGVLKTFITQQGIK------SASKEEQAQI----TSQVTGQIGWRREGIKYRRNE 689
Q ++ L ++ +K S + +Q+ +S++ G + WRR GIKYR+N
Sbjct: 120 IQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
Query: 690 LFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGI 869
+++D++E +NLL+S G VL + V+G V M++ LSGMPEC+FG+NDK+ + K +
Sbjct: 180 IYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLK-QSESKS 238
Query: 870 SGNTDSDPARSGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
N +P+ V+++DCQFHQCV+L +FE EH I+FIPPD
Sbjct: 239 KSNNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPD 282
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 219 bits (536), Expect = 5e-58
Identities = 116/276 (42%), Positives = 172/276 (62%), Gaps = 2/276 (0%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRV--NVIHARQQVRSPVTNIARTSFFHI 353
M +FV N KG V+IS YR DI + V+ F + + Q +P ++ +I
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYI 60
Query: 354 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 533
+++L A++K N +A + FL K+ DV YF ++ EE+I++NFVL+YELLDEI+DF
Sbjct: 61 HHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDF 120
Query: 534 GYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEY 713
G+PQ ++T +L+ +ITQ S + ++ A +T I WR EGI YR+NE+FLDV+E
Sbjct: 121 GFPQTTETKILQEYITQT---SNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIES 177
Query: 714 VNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNTDSDP 893
VNL+ + G V+ + + GKV +K YLSGMPE + G+NDK++ EA G+ I GNT
Sbjct: 178 VNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGR---TIKGNT---- 230
Query: 894 ARSGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
V ++D +FHQCV+L +FE + +ISFIPPD
Sbjct: 231 -------VEMEDVKFHQCVRLARFENDRTISFIPPD 259
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 68.5 bits (160), Expect = 2e-12
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Frame = +3
Query: 363 NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYP 542
++ L T + + + + +I+DV++++FG + ++ N +I +LL E++D+GY
Sbjct: 66 DVRLCIPTTCDTEPLYIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGYA 125
Query: 543 QNSDTGVLKTFITQQGIKS---ASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEY 713
+ L+ + + A Q + + WR KY NE F+ VLE
Sbjct: 126 TCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLER 185
Query: 714 VNLLMSPQGQVLSAHVAGKVVMKSYLSGMP 803
V+ + P G++ V + K +SGMP
Sbjct: 186 VSAVYQPNGKLAFGTVKSDMECKCQISGMP 215
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 33.1 bits (72), Expect = 0.080
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYR--DDIGRNAVDAFRVNVIHAR-QQVRSPVTNIARTSFFH 350
MI + + N G +S Y DD + + A +I R Q+ ++ + +
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 351 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 527
+ A ++ N + E + ++++ S+FG + E ++ NF + +LDEI+
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEII 119
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 549 NSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIPWPRSHFAL 385
+S + RS AT +S++S S + S T S+ ++ TQ+ WP +H L
Sbjct: 719 DSGSRRVTRSQNATSQSQESGS--EIGSSIAGTAGSYNVGTSNTQLSWPSTHSTL 771
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 29.5 bits (63), Expect = 0.99
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 2/140 (1%)
Frame = +3
Query: 198 VYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTS--FFHIKRANIW 371
+ N G +IS +R+ + R V++ ++ A +S T + + F + ++
Sbjct: 8 IVNRGGKAIISRQFRE-MSRVRVESL-LSSFPALVSEKSQNTTVESDNVRFVYQPLDELY 65
Query: 372 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 551
+ +T N + L + V+ S + E I I+ DE GY N
Sbjct: 66 IVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNV 125
Query: 552 DTGVLKTFITQQGIKSASKE 611
+KT++ + + +E
Sbjct: 126 SLTQIKTYLEMESHEEKIQE 145
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +3
Query: 348 HIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIK 485
+I+ N + + +++ + A++ E +++DV QS+ G + EEN++
Sbjct: 414 NIEITNPIIVSPVERSRSQALLNEIQTRVLDVRQSHGGVVLEENVR 459
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 119 SSLNRNYIETNFESV*GLTYNDRRLVRLQP 208
SS + N +E+N E V GL ND ++ L+P
Sbjct: 76 SSSSLNTMESNIEKVNGLFPNDNSVIALKP 105
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 447 QSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQ 587
+ + KI EE +K N +L YE D +S ++KTF Q
Sbjct: 952 KDFVTKIEEETLKENPLLFYEYRKASSDMRVLMDSQFLMMKTFARLQ 998
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.2 bits (55), Expect = 9.2
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Frame = +3
Query: 270 AFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQ 449
+ RVN+ + +S +N + T+ +H++ + + +A+VFEF K +
Sbjct: 839 SIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVIP--VNNRYRSAVVFEF-RKQLQRKH 895
Query: 450 SYFGKI----SEENIKNNF-VLIY------ELLDEILDFGYP 542
+ F + E+N++ N V I+ +L ++DF +P
Sbjct: 896 NVFAMVWLVDLEDNVEQNIRVPIFTSSKPAHVLQNMIDFDHP 937
>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 441 VMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNS 551
V++++ G+I+++ ++ V+IY + D L FG S
Sbjct: 113 VLKAHVGRITDDTPQHQGVVIYSMNDTPLGFGVTARS 149
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 804 ECKFGINDKIVMEAKGKGNGGISGNTDSDPARSGKPVVVIDDCQF 938
EC F +DK V+ N GI S P G+ V+ D F
Sbjct: 346 ECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDRGQIVLQADKAAF 390
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 9.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 386 CDCCQPNICTLDMEERCACNVGNR 315
C C +C L +E C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 570 SSGPQYQNSEGNQSPRSHQATHRSEQSYS*CSLQKSCQNTIASHQ*SSTGTQIP 409
SS P +SE NQ P S Q +Y+ ++ S + SS+GT P
Sbjct: 10 SSRPPSVHSERNQKPSSSQFLGVPSSNYNQRENSSRSGSSTISREPSSSGTMYP 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,212,992
Number of Sequences: 5004
Number of extensions: 84996
Number of successful extensions: 240
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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