Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_F10
         (1222 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            26   1.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   3.4  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   7.8  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           24   7.8  

>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 705 LEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECK-FGIND 827
           LE V  L+ P G  +      ++ ++ Y     ECK FG++D
Sbjct: 402 LELVRALVEPAGGSIELEECERIFVRLYADYPAECKEFGLSD 443


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 708 EYVNLLMSPQGQVLSAHVAGKVV 776
           EY+N+++ P G   SA VAG V+
Sbjct: 30  EYLNIILGPNGTGKSAIVAGIVL 52


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 564 LKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFL-DVLE--YVNLLMSP 734
           L + +T+    + +  +Q Q  + V G   WR    KY R  + L   +E  Y +++ +P
Sbjct: 227 LGSMMTENKASTFNMNKQQQRLTGVHGGCPWRPPNFKYGRGIIGLHQEIEQFYAHMIATP 286

Query: 735 QGQVLSAHVAGKV 773
               L   V  ++
Sbjct: 287 TEHALRVMVVSRI 299


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = -3

Query: 389 LCDCCQPNICTLDM--EERCAC 330
           LC CC+ + C  +M     CAC
Sbjct: 779 LCHCCEFDACDCEMTCPNNCAC 800


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,092,930
Number of Sequences: 2352
Number of extensions: 23474
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 138973980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)