Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_F10
(1222 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 468 e-132
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 460 e-129
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 457 e-129
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 231 1e-60
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 231 1e-60
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 225 5e-59
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 111 6e-30
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 42 7e-04
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 37 0.033
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 33 0.31
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 33 0.54
AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical ... 32 0.95
AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical ... 32 0.95
AL117202-3|CAB55094.2| 691|Caenorhabditis elegans Hypothetical ... 31 1.3
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 30 3.8
U41017-8|AAC48210.1| 233|Caenorhabditis elegans T box family pr... 29 6.7
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 468 bits (1154), Expect = e-132
Identities = 218/274 (79%), Positives = 242/274 (88%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 359
MIGGLFVYNHKG VLIS +YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 360 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 539
N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 540 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVN 719
PQN+D GVLKTFITQQG+++A+KEEQ+QITSQVTGQIGWRREGIKYRRNELFLDV+EYVN
Sbjct: 121 PQNTDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVN 180
Query: 720 LLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNTDSDPAR 899
LLM+ QGQVLSAHVAGKV MKSYLSGMPECKFGINDKI +E K K DP +
Sbjct: 181 LLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPG-------SDDPNK 233
Query: 900 SGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
+ + V IDDCQFHQCVKL KFETEH+ISFIPPD
Sbjct: 234 ASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPD 267
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 1033 KXISLPFRVIPXVREXGXXKM 1095
K I LPFRVIP VRE KM
Sbjct: 279 KDIQLPFRVIPLVREVSRNKM 299
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 460 bits (1133), Expect = e-129
Identities = 218/280 (77%), Positives = 242/280 (86%), Gaps = 6/280 (2%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 359
MIGGLFVYNHKG VLIS +YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 360 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 539
N+W+ AVT+QNVNAAMVFEFL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 540 PQNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGQIGWRREGIKYRRNELFLD 701
PQN+D GVLKTFITQQG+++A +KEEQ+QITSQVTGQIGWRREGIKYRRNELFLD
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 702 VLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNT 881
V+EYVNLLM+ QGQVLSAHVAGKV MKSYLSGMPECKFGINDKI +E K K
Sbjct: 181 VIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPG------- 233
Query: 882 DSDPARSGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
DP ++ + V IDDCQFHQCVKL KFETEH+ISFIPPD
Sbjct: 234 SDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPD 273
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 1033 KXISLPFRVIPXVREXGXXKM 1095
K I LPFRVIP VRE KM
Sbjct: 285 KDIQLPFRVIPLVREVSRNKM 305
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associated
protein homologueprotein.
Length = 441
Score = 457 bits (1127), Expect = e-129
Identities = 217/280 (77%), Positives = 241/280 (86%), Gaps = 6/280 (2%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 359
MIGGLFVYNHKG VLIS +YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ARTSFFH+KR
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKR 60
Query: 360 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 539
N+W+ AVT+QNVNAAMVF FL + D MQSYFGK++EEN+KNNFVLIYELLDEILDFGY
Sbjct: 61 GNVWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGY 120
Query: 540 PQNSDTGVLKTFITQQGIKSA------SKEEQAQITSQVTGQIGWRREGIKYRRNELFLD 701
PQN+D GVLKTFITQQG+++A +KEEQ+QITSQVTGQIGWRREGIKYRRNELFLD
Sbjct: 121 PQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLD 180
Query: 702 VLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNT 881
V+EYVNLLM+ QGQVLSAHVAGKV MKSYLSGMPECKFGINDKI +E K K
Sbjct: 181 VIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPG------- 233
Query: 882 DSDPARSGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
DP ++ + V IDDCQFHQCVKL KFETEH+ISFIPPD
Sbjct: 234 SDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPD 273
Score = 30.3 bits (65), Expect = 2.9
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 1033 KXISLPFRVIPXVREXGXXKM 1095
K I LPFRVIP VRE KM
Sbjct: 285 KDIQLPFRVIPLVREVSRNKM 305
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical protein
K11D2.3a protein.
Length = 422
Score = 231 bits (564), Expect = 1e-60
Identities = 114/272 (41%), Positives = 173/272 (63%), Gaps = 2/272 (0%)
Frame = +3
Query: 192 LFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 365
+F+ + KG +IS YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 366 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 545
I+L + + NVN M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 546 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLL 725
+++ +L+ +ITQ+G K S VT + WR EGIKYR+NE+FLDV+E VN+L
Sbjct: 125 TTESRILQEYITQEGQKLISAPRPPMA---VTNAVSWRSEGIKYRKNEVFLDVIESVNML 181
Query: 726 MSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNTDSDPARSG 905
S G VL + + G V M+ YL+GMPE + G+NDK++ E G+G ++S
Sbjct: 182 ASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGK-----------SKS- 229
Query: 906 KPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
V ++D +FHQCV+L +F+T+ +ISFIPPD
Sbjct: 230 ---VELEDVKFHQCVRLSRFDTDRTISFIPPD 258
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 231 bits (564), Expect = 1e-60
Identities = 114/272 (41%), Positives = 173/272 (63%), Gaps = 2/272 (0%)
Frame = +3
Query: 192 LFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQVRS--PVTNIARTSFFHIKRAN 365
+F+ + KG +IS YR DI A+D F ++++ +++ S PV T+F IK N
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF-IHLLMEKEEEGSAAPVLTYQDTNFVFIKHTN 64
Query: 366 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 545
I+L + + NVN M+ FL K ++V YF + EE++++NFV+IYELLDE++DFG+PQ
Sbjct: 65 IYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDFGFPQ 124
Query: 546 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLL 725
+++ +L+ +ITQ+G K S VT + WR EGIKYR+NE+FLDV+E VN+L
Sbjct: 125 TTESRILQEYITQEGQKLISAPRPPMA---VTNAVSWRSEGIKYRKNEVFLDVIESVNML 181
Query: 726 MSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNTDSDPARSG 905
S G VL + + G V M+ YL+GMPE + G+NDK++ E G+G ++S
Sbjct: 182 ASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGK-----------SKS- 229
Query: 906 KPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
V ++D +FHQCV+L +F+T+ +ISFIPPD
Sbjct: 230 ---VELEDVKFHQCVRLSRFDTDRTISFIPPD 258
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 1 protein.
Length = 426
Score = 225 bits (550), Expect = 5e-59
Identities = 114/274 (41%), Positives = 170/274 (62%), Gaps = 1/274 (0%)
Frame = +3
Query: 183 IGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIHARQQ-VRSPVTNIARTSFFHIKR 359
I GLF+ + KG V+IS YR D+ + ++ F ++ + SPV S+ +IK
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKY 62
Query: 360 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 539
N++L ++K+N N +V L KI++V YF + EE +++NFV+IYEL DE+LDFGY
Sbjct: 63 MNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGY 122
Query: 540 PQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVN 719
PQ +++ +L+ FITQQG ++ E + VT + WR EGIKYR+NE+FLDV+E VN
Sbjct: 123 PQTTESKILQEFITQQG----NRLETVRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVN 178
Query: 720 LLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNTDSDPAR 899
+L + QG VL + + G + + LSGMPE + G+NDK+ + G S
Sbjct: 179 MLANAQGTVLRSEIVGSIRFRVVLSGMPELRLGLNDKVFFQQSG---------ASSRRGN 229
Query: 900 SGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
SGK V ++D +FHQCV+L +F++E +ISFIPPD
Sbjct: 230 SGKG-VELEDIKFHQCVRLSRFDSERTISFIPPD 262
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 111 bits (267), Expect(2) = 6e-30
Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 10/219 (4%)
Frame = +3
Query: 180 MIGGLFVYNHKGXVLISXVYRDDIGRNAVDAF---RVNVIHARQQVRSPVTNIARTSFFH 350
M+ LF N G VL+ ++ I R+ D F + IH P+ + +
Sbjct: 1 MLNSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDV--PPIISTPHHYLIN 58
Query: 351 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 530
+ + N++L AV MV EFL ++I YF + S+ ++K N V+++ELLDE+LD
Sbjct: 59 VYQNNLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLD 118
Query: 531 FGYPQNSDTGVLKTFITQQG-IKSASKEEQAQIT---SQVTGQ---IGWRREGIKYRRNE 689
G+P ++ +L+ I +++ + + + + TGQ I WRR+G+KY NE
Sbjct: 119 NGFPLVTEMNILQDLIKPPNFLRNIANQVTGRTNLSETLPTGQLSNIPWRRQGVKYTNNE 178
Query: 690 LFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPE 806
+ DV+E +++++ QG + A + G V + LSGMP+
Sbjct: 179 AYFDVIEEIDVIVDKQGSTVFAEIQGYVDVCCKLSGMPD 217
Score = 38.3 bits (85), Expect(2) = 6e-30
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 918 VIDDCQFHQCVKLXKFETEHSISFIPPD 1001
++DD FH CV+ ++E E +SF+PPD
Sbjct: 227 LLDDVSFHPCVRYKRWENEKVLSFVPPD 254
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 42.3 bits (95), Expect = 7e-04
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 360 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFG- 536
A+++ +QN N + E + + ++++ YFG + E +I NF Y +LDE L G
Sbjct: 63 ASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGE 122
Query: 537 YPQNSDTGVLKTFITQQGIK 596
+ S VLK Q I+
Sbjct: 123 IQETSKKQVLKAIAAQDLIQ 142
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 36.7 bits (81), Expect = 0.033
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Frame = +3
Query: 198 VYNHKGXVLISXVYRDDIGRNA----VDAFRVNVIHARQQVRSPVTNIARTSFFHIKRA- 362
+ + G +L++ + +D+ R+ VDAF + + ++ T + S ++
Sbjct: 8 ILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVYHPL 67
Query: 363 -NIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENI-KNNFVLIYELLDEILDFG 536
NI+L VT +N N E L + V+ Y E+ I ++F LI+ DE++ G
Sbjct: 68 DNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIF-AFDEVVTLG 126
Query: 537 YPQNSDTGVLKTF 575
Y ++ + ++TF
Sbjct: 127 YRESVNLAQIRTF 139
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 33.5 bits (73), Expect = 0.31
Identities = 24/109 (22%), Positives = 51/109 (46%)
Frame = +3
Query: 675 YRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGK 854
Y+++E+ + + + + +G + ++ ++L+G P + G+ND+ +GK
Sbjct: 1249 YKQDEVQIHCYDEYSAFVDKEGILSDQKARVRLFCLAFLTGSPVLEVGLNDR---RRQGK 1305
Query: 855 GNGGISGNTDSDPARSGKPVVVIDDCQFHQCVKLXKFETEHSISFIPPD 1001
I D P + + + + +FH V +F+ E I+F PPD
Sbjct: 1306 E---IVRRKDILPMYTER-WIRFEALEFHSIVNKPEFDKEQVIAFSPPD 1350
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.54
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = +3
Query: 279 VNVIHARQQVRSPV-TNIARTSFFHI---KRANIWLAAVTKQNVNAAMVFEFLLKIIDVM 446
+ +HA VR TN F I + A ++ N E + ++V+
Sbjct: 32 IEEVHACVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCICVDITDNNLYYLEAIHNFVEVL 91
Query: 447 QSYFGKISEENIKNNFVLIYELLDEILDFG-YPQNSDTGVLKTFI 578
YF + E ++ NF +Y ++DE+ G + S T VLK +
Sbjct: 92 NEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
>AL021480-5|CAJ21557.1| 432|Caenorhabditis elegans Hypothetical
protein Y39E4A.3b protein.
Length = 432
Score = 31.9 bits (69), Expect = 0.95
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 504 YELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE--QAQITSQVTGQIGWRREGIKY 677
Y DE+ +G + T K +IT++G + KE Q ++ +V + + K
Sbjct: 329 YRSSDEVQTWGDKDHPITR-FKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKA 387
Query: 678 RRNELFLDVLEYVNLLMSPQGQVLSAHVA 764
++LF DV + + L + Q L AHVA
Sbjct: 388 HYHDLFEDVYDELPLRLRRQRDELDAHVA 416
>AL021480-4|CAA16329.2| 431|Caenorhabditis elegans Hypothetical
protein Y39E4A.3a protein.
Length = 431
Score = 31.9 bits (69), Expect = 0.95
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 504 YELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEE--QAQITSQVTGQIGWRREGIKY 677
Y DE+ +G + T K +IT++G + KE Q ++ +V + + K
Sbjct: 328 YRSSDEVQTWGDKDHPITR-FKKYITERGWWNEEKEMEWQKEVKKRVLTEFAAAEKRKKA 386
Query: 678 RRNELFLDVLEYVNLLMSPQGQVLSAHVA 764
++LF DV + + L + Q L AHVA
Sbjct: 387 HYHDLFEDVYDELPLRLRRQRDELDAHVA 415
>AL117202-3|CAB55094.2| 691|Caenorhabditis elegans Hypothetical
protein Y47D3A.4 protein.
Length = 691
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 813 FGINDKIVMEAKGKGNGGISGNTDSD-PARSGKPVVVIDDCQFHQCVKLXKFETEHSIS 986
F +ND+I E K K + G TD D P+ S K + I DC K+ KF+ + +S
Sbjct: 598 FALNDEI-KETKPKASAGRKRKTDDDEPSTSKKATMTIRDC--IAADKIGKFKKDELLS 653
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 138 TLKPILKACEASPTMIGGLFVYNHKGXVLISXVYRDDIGRNAVDAFRVNVIH 293
T + +++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 255 TCRIYFNVSQSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
>U41017-8|AAC48210.1| 233|Caenorhabditis elegans T box family
protein 41 protein.
Length = 233
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 931 QSSMTTT-GFPERAGSLSVLPDMPPFPFPLASITILSLIPNLHSGIPDRYD 782
Q+SM+ T + ++ V P PFPFP T+ S + G P+ D
Sbjct: 176 QNSMSYTFSYDTYPSNIHVAPIQLPFPFPAVLSTLASSLQLCRDGDPEEID 226
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,883,553
Number of Sequences: 27780
Number of extensions: 501501
Number of successful extensions: 1524
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3370329934
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -